Tóth, G., Gáspári, Z., and Jurka, J., Microsatellites in different eukaryotic genomes: survey and analysis, Genome Res., 2000, vol. 10, no. 7, pp. 967—981. https://doi.org/10.1101/gr.10.7.967

Article  PubMed  PubMed Central  Google Scholar 

Fungtammasan, A., Ananda, G., Hile, S.E., et al., Accurate typing of short tandem repeats from genome-wide sequencing data and its applications, Genome Res., 2015, vol. 25, pp. 736—749. https://doi.org/10.1101/gr.185892.114

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hatcher, E., Wang, C., and Lefkowitz, E., Genome variability and gene content in chordopoxviruses: dependence on microsatellites, Viruses, 2015, vol. 7, pp. 2126—2146. https://doi.org/10.3390/v7042126

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ahmed, M.M., Shen, C., Khan, A.Q., et al., A comparative genomics approach revealed evolutionary dynamics of microsatellite imperfection and conservation in genus Gossypium, Hereditas, 2017, vol. 154. https://doi.org/10.1186/s41065-017-0034-4

Tautz, D., Hypervariability of simple sequences as a general source for polymorphic DNA markers, Nucleic Acids Res., 1989, vol. 17, no. 16, pp. 6463–6471. https://doi.org/10.1093/nar/17.16.6463

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lai, Y., The relationship between microsatellite slippage mutation rate and the number of repeat units, Mol. Biol. Evol., 2003, vol. 20, no. 12, pp. 2123—2131. https://doi.org/10.1093/molbev/msg228

Article  CAS  PubMed  Google Scholar 

Sand, L., Szuhai, K., and Hogendoorn, P., Sequencing overview of Ewing sarcoma: a journey across genomic, epigenomic and transcriptomic landscapes, Int. J. Mol. Sci., 2015, vol. 16, pp. 16176—16215. https://doi.org/10.3390/ijms160716176

Article  CAS  PubMed  PubMed Central  Google Scholar 

Künzler, P., Matsuo, K., and Schaffner, W., Pathological, physiological, and evolutionary aspects of short unstable DNA repeats in the human genome, Biol. Chem. Hoppe-Seyler, 1995, vol. 376. https://doi.org/10.1515/bchm3.1995.376.4.201

Huang, T., Lee, C., Chang, A., et al., Shortening of microsatellite deoxy (CA) repeats involved in GL331-induced down-regulation of matrix metalloproteinase-9 gene expression, Biochem. Biophys. Res. Commun., 2003, vol. 300, no. 4, pp. 901—907. https://doi.org/10.1016/s0006-291x(02)02962-5

Article  CAS  PubMed  Google Scholar 

Min, J., Zhang, J., Zheng, R., and Bao, D., Isolation of microsatellite markers by cross-amplification and genetic diversity analysis in Macroclemys temminckii, J. Zool., 2013, vol. 48, pp. 926—932. https://doi.org/10.13859/j.cjz.2013.06.007

Article  CAS  Google Scholar 

Saeed, A.F., Wang, R., and Wang, S., Microsatellites in pursuit of microbial genome evolution, Front. Microbiol., 2015, vol. 6. https://doi.org/10.3389/fmicb.2015.01462

Sahoo, L., Patel, A., Sahu, B.P., et al., Preliminary genetic linkage map of Indian major carp, Labeo rohita (Hamilton 1822) based on microsatellite markers, J. Genet., 2015, vol. 94, pp. 271—277. https://doi.org/10.1007/s12041-015-0528-7

Article  CAS  PubMed  Google Scholar 

Simbine, L., Viana, D.J., and Hilsdorf, A.W., The genetic diversity of wild Oreochromis mossambicus populations from the Mozambique southern watersheds as evaluated by microsatellites, J. Appl. Ichthyol., 2014, vol. 30, pp. 272—280. https://doi.org/10.1111/jai.12390

Article  CAS  Google Scholar 

Li, S., Wang, Y., Li, H., et al., Utilization of a microsatellite marker to ldentify rice blast resistance gene in two segregating populations, Chin. J. Biotechnol., 2000, vol. 3, pp. 324—327. https://doi.org/10.13345/j.cjb.2000.03.007

Article  Google Scholar 

Selkoe, K.A. and Toonen, R.J., Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers, Ecol. Lett., 2006, vol. 9, no. 5, pp. 615—629. https://doi.org/10.1111/j.1461-0248.2006.00889.x

Article  PubMed  Google Scholar 

Lim, S., Notley-McRobb, L., Lim, M., and Carter, D.A., A comparison of the nature and abundance of microsatellites in 14 fungal genomes, Fungal Genet. Biol., 2004, vol. 41, no. 11, pp. 1025—1036. https://doi.org/10.1016/j.fgb.2004.08.004

Article  CAS  PubMed  Google Scholar 

Mrázek, J., Guo, X., and Shah, A., Simple sequence repeats in prokaryotic genomes, Proc. Natl. Acad. Sci. U.S.A., 2007, vol. 104, no. 20, pp. 8472—8477. https://doi.org/10.1073/pnas.0702412104

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zhao, X., Tan, Z., Feng, H., et al., Microsatellites in different Potyvirus genomes: survey and analysis, Gene, 2011, vol. 488, nos. 1—2, pp. 52—56. https://doi.org/10.1016/j.gene.2011.08.016

Article  CAS  PubMed  Google Scholar 

Liu, S., Hou, W., Sun, T., et al., Genome-wide mining and comparative analysis of microsatellites in three macaque species, Mol. Genet. Genomics, 2017, vol. 292, no. 3, pp. 537—550. https://doi.org/10.1007/s00438-017-1289-1

Article  CAS  PubMed  Google Scholar 

Xu, Y., Li, W., Hu, Z., et al., Genome-wide mining of perfect microsatellites and tetranucleotide orthologous microsatellites estimates in six primate species, Gene, 2018, vol. 643, pp. 124—132. https://doi.org/10.1016/j.gene.2017.12.008

Article  CAS  PubMed  Google Scholar 

Burranboina, K., Abraham, S., Murugan, K., et al., Genome wide identification and analysis of microsatellite repeats in the largest DNA viruses (Poxviridae family): an insilico approach, Annu. Res. Rev. Biol., 2018, vol. 22, no. 1, pp. 1—11. https://doi.org/10.9734/ARRB/2018/38367

Article  Google Scholar 

Lei, Y., Zhou, Y., Price, M., and Song, Z., Genome-wide characterization of microsatellite DNA in fishes: survey and analysis of their abundance and frequency in genome-specific regions, BMC Genomics, 2021, vol. 22, no. 1. https://doi.org/10.1186/s12864-021-07752-6

Winterbottom, R. and Emery, A.R., A new genus and two new species of gobiid fishes (Perciformes) from the Chagos Archipelago, Central Indian Ocean, Environ. Biol. Fishes, 1981, vol. 6, pp. 139—149. https://doi.org/10.1007/bf00002777

Article  Google Scholar 

Robert, A.P., James, L., Van, T.M.K., and Kapoor, B.G., The Biology of Gobies, CRC Press, 2011.

Google Scholar 

Hemmer-Hansen, J., Hüssy, K., Baktoft, H., et al., Genetic analyses reveal complex dynamics within a marine fish management area, Evol. Appl., 2018, vol. 12, no. 4, pp. 830—844. https://doi.org/10.1111/eva.12760

Article  CAS  Google Scholar 

Bai, C., Liu, S., and Zhuang, C., Distribution characteristics of microsatellite DNA in the genome of Gobiidae, Progr. Fish. Sci., 2016, vol. 5, pp. 9—15. https://doi.org/10.11758/yykxjz.20151008001

Article  Google Scholar 

Zane, L., Bargelloni, L., and Patarnello, T., Strategies for microsatellite isolation: a review, Mol. Ecol., 2002, vol. 11, no. 1, pp. 1—16. https://doi.org/10.1046/j.0962-1083.2001.01418.x

Article  CAS  PubMed  Google Scholar 

Orabi, J., Jahoor, A., and Backes, G., Changes in allelic frequency over time in European bread wheat (Triticum aestivum L.) varieties revealed using DArT and SSR markers, Euphytica, 2014, vol. 197, no. 3, pp. 447—462. https://doi.org/10.1007/s10681-014-1080-x

Article  CAS  Google Scholar 

Huang, X., Jiang, Y., Jiang, S., and Yang, T., Analysis of microsatellite markers in Harpadon nehereus based on transcriptome sequencing Illumina HiseqTM 2500, J. Zhejiang Ocean Univ., 2021, vol. 3, pp. 189—197.

Google Scholar 

Lee, H., Moon, S., Shim, D., et al., Development of 44 novel polymorphic SSR markers for determination of shiitake mushroom (Lentinula edodes) cultivars, Genes, 2017, vol. 8, no. 4. https://doi.org/10.3390/genes8040109

Varga, F., Liber, Z., Jakše, J., et al., Development of microsatellite markers for Tanacetum cinerariifolium (Trevis.) Sch. Bip., a plant with a large and highly repetitive genome, Plants (Basel, Switzerland), 2022, vol. 11, no. 13. https://doi.org/10.3390/plants11131778

Chen, S., Zhou, Y., Chen, Y., and Gu, J., fastp: an ultra-fast all-in-one FASTQ preprocessor, Bioinformatics, 2018, vol. 34, pp. i884—i890. https://doi.org/10.1093/bioinformatics/bty560

Article  CAS  PubMed  PubMed Central  Google Scholar 

Benson, G., Tandem repeats finder: a program to analyze DNA sequences, Nucleic Acids Res., 1999, vol. 27, no. 2, pp. 573—580. https://doi.org/10.1093/nar/27.2.573

Article  CAS  PubMed  PubMed Central  Google Scholar 

Smit, A.F.A., Hubley, R., and Green, P., RepeatModeler Open-1.0. 2008–2015, Seattle, USA: Institute for Systems Biology, 2015, vol. 1, p. 2018.

Smit, A.F.A., Hubley, R., and Green, P., RepeatMasker Open-4.0. 2013–2015, Biotechnology, 2015. vol. 25, no. 11, pp. 490—498.

Google Scholar 

Waterhouse, R., Seppey, M., Simão, F., et al., BUSCO applications from quality assessments to gene prediction and phylogenomics, Mol. Biol. Evol., 2018, vol. 35, no. 3, pp. 543—548. https://doi.org/10.1093/molbev/msx319