Illuminating the dark majority: photobiology of nonphotosynthetic bacteria

Flombaum, P., Gallegos, J. L., Gordillo, R. A., Rincón, J., Zabala, L. L., Jiao, N., Karl, D. M., Li, W. K. W., Lomas, M. W., Veneziano, D., Vera, C. S., Vrugt, J. A., & Martiny, A. C. (2013). Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. Proceedings of the National Academy of Sciences of the United States of America, 110, 9824.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Moran, M. A. (2015). The global ocean microbiome. Science. https://doi.org/10.1126/science.aac8455

Article  PubMed  Google Scholar 

Whitman, W. B., Coleman, D. C., & Wiebe, W. J. (1998). Prokaryotes: The unseen majority. Proceedings of the National Academy of Sciences of the United States of America, 95, 6578.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Gao, X., Jiang, Y., Lin, Y., Kim, K. H., Fang, Y., Yi, J., Meng, L., Lee, H. C., Lu, Z., Leddy, O., Zhang, R., Tu, Q., Feng, W., Nair, V., Griffin, P. J., Shi, F., Shekhawat, G. S., Dinner, A. R., Park, H. G., & Tian, B. (2020). Structured silicon for revealing transient and integrated signal transductions in microbial systems. Science Advances, 6, Article eaay2760.

Article  PubMed  PubMed Central  CAS  Google Scholar 

McCuskey, S. R., Chatsirisupachai, J., Zeglio, E., Parlak, O., Panoy, P., Herland, A., Bazan, G. C., & Nguyen, T. Q. (2022). Current progress of interfacing organic semiconducting materials with bacteria. Chemical Reviews, 122, 4791.

Article  PubMed  CAS  Google Scholar 

Yang, P., Cai, R., Kim, J. M., Cestellos-Blanco, S., & Jin, J. (2020). Microbes 2.0: Engineering microbes with nanomaterials. AsiaChem Magazine, 1, 36.

Article  Google Scholar 

Cestellos-Blanco, S., Zhang, H., Kim, J. M., Xiao Shen, Y., & Yang, P. (2020). Photosynthetic semiconductor biohybrids for solar-driven biocatalysis. Nature Catalysis, 3, 245.

Article  CAS  Google Scholar 

Zhang, H., Liu, H., Tian, Z., Lu, D., Yu, Y., Cestellos-Blanco, S., Sakimoto, K. K., & Yang, P. (2018). Bacteria photosensitized by intracellular gold nanoclusters for solar fuel production. Nature Nanotechnology, 13, 900.

Article  PubMed  CAS  Google Scholar 

Paterno, G. M., Lanzani, G., Bondelli, G., Sakai, V. G., Sesti, V., & Bertarelli, C. (2020). The effect of an intramembrane light-actuator on the dynamics of phospholipids in model membranes and intact cells. Langmuir, 36, 11517.

Article  PubMed  CAS  Google Scholar 

Paternò, G. M., Bondelli, G., & Lanzani, G. (2021). Bringing microbiology to light: Toward all-optical electrophysiology in bacteria. Bioelectricity, 3, 136.

Article  PubMed  PubMed Central  Google Scholar 

de Souza-Guerreiro, T. C., Bondelli, G., Grobas, I., Donini, S., Sesti, V., Bertarelli, C., Lanzani, G., Asally, M., & Paternò, G. M. (2023). Membrane targeted azobenzene drives optical modulation of bacterial membrane potential. Advanced Science, 10, Article e0130224.

Article  Google Scholar 

Paternò, G. M. (2024). Materials-driven strategies in bacterial engineering. MRS Communications, 14, 1027.

Article  PubMed  PubMed Central  Google Scholar 

Bren, A., Park, J. O., Towbin, B. D., Dekel, E., Rabinowitz, J. D., & Alon, U. (2016). Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP. Science and Reports, 6, Article 24834.

Article  CAS  Google Scholar 

Ilgrande, C., Leroy, B., Wattiez, R., Vlaeminck, S. E., Boon, N., & Clauwaert, P. (2018). Metabolic and proteomic responses to salinity in synthetic nitrifying communities of Nitrosomonas spp. and Nitrobacter spp. Frontiers in Microbiology, 9, Article 418659.

Article  Google Scholar 

Kremer, K., van Teeseling, M. C. F., Schada von Borzyskowski, L., Bernhardsgrütter, I., van Spanning, R. J. M., Gates, A. J., Remus-Emsermann, M. N. P., Thanbichler, M., & Erb, T. J. (2019). Dynamic metabolic rewiring enables efficient acetyl coenzyme A assimilation in Paracoccus denitrificans. MBio. https://doi.org/10.1128/mBio.00805-19

Article  PubMed  PubMed Central  Google Scholar 

Marbehan, X., Roger, M., Fournier, F., Infossi, P., Guedon, E., Delecourt, L., Lebrun, R., Giudici-Orticoni, M. T., & Delaunay, S. (2024). Combining metabolic flux analysis with proteomics to shed light on the metabolic flexibility: The case of Desulfovibrio vulgaris Hildenborough. Frontiers in Microbiology, 15, 1336360.

Article  PubMed  PubMed Central  Google Scholar 

Liu, X., Chu, G., Du, Y., Li, J., & Si, Y. (2019). The role of electron shuttle enhances Fe(III)-mediated reduction of Cr(VI) by Shewanella oneidensis MR-1. World Journal of Microbiology & Biotechnology, 35, 64.

Article  CAS  Google Scholar 

Benarroch, J. M., & Asally, M. (2020). The microbiologist’s guide to membrane potential dynamics. Trends in Microbiology, 28, 304.

Article  PubMed  CAS  Google Scholar 

Lo, W. C., Krasnopeeva, E., & Pilizota, T. (2024). Bacterial electrophysiology. Annual Review of Biophysics, 53, 487.

Article  PubMed  CAS  Google Scholar 

Kralj, J. M., Hochbaum, D. R., Douglass, A. D., & Cohen, A. E. (2011). Electrical spiking in Escherichia coli probed with a fluorescent voltage-indicating protein. Science, 333, 345.

Article  PubMed  CAS  Google Scholar 

Prindle, A., Liu, J., Asally, M., Ly, S., Garcia-Ojalvo, J., & Süel, G. M. (2015). Ion channels enable electrical communication in bacterial communities. Nature, 527, 59.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Yang, C. Y., Bialecka-Fornal, M., Weatherwax, C., Larkin, J. W., Prindle, A., Liu, J., Garcia-Ojalvo, J., & Süel, G. M. (2020). Encoding membrane-potential-based memory within a microbial community. Cell Systems, 10, 417.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Stratford, J. P., Edwards, C. L. A., Ghanshyam, M. J., Malyshev, D., Delise, M. A., Hayashi, Y., & Asally, M. (2019). Electrically induced bacterial membrane-potential dynamics correspond to cellular proliferation capacity. Proceedings of the National Academy of Sciences of the United States of America, 116, 9552.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Akabuogu, E., Carneiro da Cunha Martorelli, V., Krašovec, R., Roberts, I. S., & Waigh, T. A. (2025). Emergence of ion-channel-mediated electrical oscillations in Escherichia coli biofilms. eLife. https://doi.org/10.7554/elife.92525.3

Article  PubMed  PubMed Central  Google Scholar 

Blee, J. A., Roberts, I. S., & Waigh, T. A. (2020). Membrane potentials, oxidative stress and the dispersal response of bacterial biofilms to 405 nm light. Physics Biology, 17, Article 036001.

Article  CAS  Google Scholar 

Ávila-Pérez, M., Hellingwerf, K. J., & Kort, R. (2006). Blue light activates the sigmaB-dependent stress response of Bacillus subtilis via YtvA. Journal of Bacteriology, 188, 6411.

Article  PubMed  PubMed Central  Google Scholar 

Van Der Steen, J. B., & Hellingwerf, K. J. (2015). Photochemistry and photobiology (pp. 1032–1045). John Wiley & Sons, Ltd.

van der Horst, M. A., Key, J., & Hellingwerf, K. J. (2007). Photosensing in chemotrophic, non-phototrophic bacteria: Let there be light sensing too. Trends in Microbiology, 15, 554.

Article  PubMed  Google Scholar 

Metcalf, W. W., Zhang, J. K., Shi, X., & Wolfe, R. S. (1996). Molecular, genetic, and biochemical characterization of the serC gene of Methanosarcina barkeri Fusaro. Journal of Bacteriology, 178, 5797.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Kumar, S., Rai, A. K., Mishra, M. N., Shukla, M., Singh, P. K., & Tripathi, A. K. (2012). RpoH2 sigma factor controls the photooxidative stress response in a non-photosynthetic rhizobacterium, Azospirillum brasilense Sp7. Microbiology, 158, 2891.

Article  PubMed  CAS  Google Scholar 

Hecker, M., Pané-Farré, J., & Völker, U. (2007). SigB-dependent general stress response in Bacillus subtilis and related gram-positive bacteria. Annual Review of Microbiology, 61, 215.

Article  PubMed  CAS  Google Scholar 

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