Bacteroides- and Prevotella-enriched gut microbial clusters associate with metabolic risks

de Vos WM, Tilg H, Van Hul M, Cani PD. Gut microbiome and health: mechanistic insights. Gut. 2022;71(5):1020–32.

PubMed  Google Scholar 

Liu J, Tan Y, Cheng H, Zhang D, Feng W, Peng C. Functions of gut microbiota metabolites, current status and future perspectives. Aging Dis. 2022;13(4):1106–26.

PubMed  PubMed Central  Google Scholar 

Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, et al. Enterotypes of the human gut microbiome. Nature. 2011;473(7346):174–80.

CAS  PubMed  PubMed Central  Google Scholar 

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, et al. Enterotypes in the landscape of gut microbial community composition. Nat Microbiol. 2018;3(1):8–16.

CAS  PubMed  Google Scholar 

Vieira-Silva S, Falony G, Belda E, Nielsen T, Aron-Wisnewsky J, Chakaroun R, et al. Statin therapy is associated with lower prevalence of gut microbiota dysbiosis. Nature. 2020;581(7808):310–5.

CAS  PubMed  Google Scholar 

Holmes I, Harris K, Quince C. Dirichlet multinomial mixtures: generative models for microbial metagenomics. PLoS ONE. 2012;7(2): e30126.

CAS  PubMed  PubMed Central  Google Scholar 

Quaglio AEV, Grillo TG, Oliveira ECSD, Stasi LCD, Sassaki LY. Gut microbiota, inflammatory bowel disease and colorectal cancer. World J Gastroenterol. 2022;28(30):4053.

CAS  PubMed  PubMed Central  Google Scholar 

Wilmanski T, Kornilov SA, Diener C, Conomos MP, Lovejoy JC, Sebastiani P, et al. Heterogeneity in statin responses explained by variation in the human gut microbiome. Med. 2022;3(6):388-405.e6.

CAS  PubMed  Google Scholar 

Kameoka S, Motooka D, Watanabe S, Kubo R, Jung N, Midorikawa Y, et al. Benchmark of 16S rRNA gene amplicon sequencing using Japanese gut microbiome data from the V1–V2 and V3–V4 primer sets. BMC Genom. 2021;22(1):527.

CAS  Google Scholar 

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019;37(8):852–7.

CAS  PubMed  PubMed Central  Google Scholar 

Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013;41(Database issue):D590-596.

CAS  PubMed  Google Scholar 

Sung J, Kim S, Cabatbat JJT, Jang S, Jin YS, Jung GY, et al. Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis. Nat Commun. 2017;8(1):15393.

CAS  PubMed  PubMed Central  Google Scholar 

Bäckhed F, Fraser CM, Ringel Y, Sanders ME, Sartor RB, Sherman PM, et al. Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications. Cell Host Microbe. 2012;12(5):611–22.

PubMed  Google Scholar 

Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK, Knight R. Diversity, stability and resilience of the human gut microbiota. Nature. 2012;489(7415):220–30.

CAS  PubMed  PubMed Central  Google Scholar 

Fusco W, Lorenzo MB, Cintoni M, Porcari S, Rinninella E, Kaitsas F, et al. Short-chain fatty-acid-producing bacteria: key components of the human gut microbiota. Nutrients. 2023;15(9):2211.

CAS  PubMed  PubMed Central  Google Scholar 

Grenda T, Grenda A, Domaradzki P, Krawczyk P, Kwiatek K. Probiotic potential of Clostridium spp.-advantages and doubts. Curr Issues Mol Biol. 2022;44(7):3118–30.

CAS  PubMed  PubMed Central  Google Scholar 

Cheng M, Ning K. Stereotypes about enterotype: the old and new ideas. Genom Proteom Bioinform. 2019;17(1):4–12.

Google Scholar 

Di Pierro F. A possible perspective about the compositional models, evolution, and clinical meaning of human enterotypes. Microorganisms. 2021;9(11):2341.

PubMed  PubMed Central  Google Scholar 

Keller MI, Nishijima S, Podlesny D, Kim CY, Robbani SM, Schudoma C, et al. Refined enterotyping reveals dysbiosis in global fecal metagenomes. bioRxiv. 2024; 607711.

Frioux C, Ansorge R, Özkurt E, Ghassemi Nedjad C, Fritscher J, Quince C, et al. Enterosignatures define common bacterial guilds in the human gut microbiome. Cell Host Microbe. 2023;31(7):1111-1125.e6.

CAS  PubMed  Google Scholar 

Breuninger TA, Wawro N, Breuninger J, Reitmeier S, Clavel T, Six-Merker J, et al. Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation. Microbiome. 2021;9(1):61.

CAS  PubMed  PubMed Central  Google Scholar 

Yuan H, Wu X, Wang X, Zhou JY, Park S. Microbial dysbiosis linked to metabolic dysfunction-associated fatty liver disease in Asians: Prevotella Copri promotes lipopolysaccharide biosynthesis and network instability in the Prevotella Enterotype. Int J Mol Sci. 2024;25(4):2183.

CAS  PubMed  PubMed Central  Google Scholar 

Wu X, Zhang T, Zhang T, Park S. The impact of gut microbiome enterotypes on ulcerative colitis: identifying key bacterial species and revealing species co-occurrence networks using machine learning. Gut Microbes. 2023;16(1):2292254.

PubMed  PubMed Central  Google Scholar 

Aron-Wisnewsky J, Prifti E, Belda E, Ichou F, Kayser BD, Dao MC, et al. Major microbiota dysbiosis in severe obesity: fate after bariatric surgery. Gut. 2019;68(1):70–82.

CAS  PubMed  Google Scholar 

Vandeputte D, Kathagen G, D’hoe K, Vieira-Silva S, Valles-Colomer M, Sabino J, et al. Quantitative microbiome profiling links gut community variation to microbial load. Nature. 2017;551(7681):507–11.

CAS  PubMed  Google Scholar 

Vieira-Silva S, Sabino J, Valles-Colomer M, Falony G, Kathagen G, Caenepeel C, et al. Quantitative microbiome profiling disentangles inflammation- and bile duct obstruction-associated microbiota alterations across PSC/IBD diagnoses. Nat Microbiol. 2019;4(11):1826–31.

CAS  PubMed  Google Scholar 

Wang J, Li W, Wang C, Wang L, He T, Hu H, et al. Enterotype bacteroides is associated with a high risk in patients with diabetes: a pilot study. J Diabetes Res. 2020;2020(1):6047145.

PubMed  PubMed Central  Google Scholar 

Zhu L, Baker SS, Gill C, Liu W, Alkhouri R, Baker RD, et al. Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH. Hepatology. 2013;57(2):601–9.

CAS  PubMed  Google Scholar 

Sobhani I, Tap J, Roudot-Thoraval F, Roperch JP, Letulle S, Langella P, et al. Microbial dysbiosis in colorectal cancer (CRC) patients. PLoS ONE. 2011;6(1): e16393.

CAS  PubMed  PubMed Central  Google Scholar 

Zeller G, Tap J, Voigt AY, Sunagawa S, Kultima JR, Costea PI, et al. Potential of fecal microbiota for early-stage detection of colorectal cancer. Mol Syst Biol. 2014;10(11):766.

PubMed  PubMed Central  Google Scholar 

Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, et al. Richness of human gut microbiome correlates with metabolic markers. Nature. 2013;500(7464):541–6.

PubMed  Google Scholar 

Claesson MJ, Jeffery IB, Conde S, Power SE, O’Connor EM, Cusack S, et al. Gut microbiota composition correlates with diet and health in the elderly. Nature. 2012;488(7410):178–84.

CAS  PubMed  Google Scholar 

Wu J, Li Q, Fu X. Fusobacterium nucleatum contributes to the carcinogenesis of colorectal cancer by inducing inflammation and suppressing host immunity. Transl Oncol. 2019;12(6):846–51.

PubMed  PubMed Central  Google Scholar 

Rojas-Tapias DF, Brown EM, Temple ER, Onyekaba MA, Mohamed AMT, Duncan K, et al. Inflammation-associated nitrate facilitates ectopic colonization of oral bacterium Veillonella parvula in the intestine. Nat Microbiol. 2022;7(10):1673–85.

CAS  PubMed  PubMed Central  Google Scholar 

Sayols-Baixeras S, Dekkers KF, Baldanzi G, Jönsson D, Hammar U, Lin YT, et al. Streptococcus species abundance in the gut is linked to subclinical coronary atherosclerosis in 8973 participants from the SCAPIS cohort. Circulation. 2023;148(6):459–72.

CAS  PubMed  PubMed Central  Google Scholar 

Yoon SJ, Yu JS, Min BH, Gupta H, Won SM, Park HJ, et al. Bifidobacterium-derived short-chain fatty acids and indole compounds attenuate nonalcoholic fatty liver disease by modulating gut-liver axis. Front Microbiol. 2023;14:1129904.

PubMed  PubMed Central  Google Scholar 

Zhou J, Zhang Q, Zhao Y, Zou Y, Chen M, Zhou S, et al. The relationship of Megamonas species with nonalcoholic fatty liver disease in children and adolescents revealed by metagenomics of gut microbiota. Sci Rep. 2022

Comments (0)

No login
gif