Large Scale Acquisition, Segmentation and 3D Reconstruction of Cortical Vasculature using $$\mu $$Doppler Ultrasound Imaging

Al-Bachari, S., Naish, J., Parker, G., Emsley, H., & Parkes, L. (2020). Blood-brain barrier leakage is increased in parkinson’s disease. Frontiers in Physiology, 11

Aziz, M. U., Eisenbrey, J. R., Deganello, A., Zahid, M., Sharbidre, K., Sidhu, P., & Robbin, M. L. (2022). Microvascular flow imaging: a state-of-the-art review of clinical use and promise. Radiology, 305(2), 250–264.

Article  PubMed  Google Scholar 

Babin, D., Pizurica, A., Bellens, R., De Bock, J., Shang, Y., Goossens, B., Vansteenkiste, E., & Philips, W. (2012). Generalized pixel profiling and comparative segmentation with application to arteriovenous malformation segmentation. Medical Image Analysis, 16, 991–1002.

Article  CAS  PubMed  Google Scholar 

Babin, D., Pizurica, A., Velicki, L., Matić, V., Galić, I., Leventić, H., Zlokolica, V., & Philips, W. (2018). Skeletonization method for vessel delineation of arteriovenous malformation. Computers in Biology and Medicine, 93, 93–105.

Article  CAS  PubMed  Google Scholar 

Bar-Zion, A., Solomon, O., Rabut, C., Maresca, D., Eldar, Y., & Shapiro, M. (2021). Doppler slicing for ultrasound super-resolution without contrast agents. bioRxiv.

Bergel, A., Deffieux, T., Demené, C., Tanter, M., & Cohen, I. (2018). Local hippocampal fast gamma rhythms precede brain-wide hyperemic patterns during spontaneous rodent rem sleep. Nature communications, 9(1), 5364.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Biju, K., Shen, Q., Torres Hernandez, E., Mader, M., & Clark, R. (2020). Reduced cerebral blood flow in an \(\alpha \) -synuclein transgenic mouse model of parkinson’s disease. Journal of Cerebral Blood Flow and Metabolism, 40:0271678X1989543.

Blinder, P., Tsai, P. S., Kaufhold, J. P., Knutsen, P. M., Suhl, H., & Kleinfeld, D. (2013). The cortical angiome: an interconnected vascular network with noncolumnar patterns of blood flow. Nature Neuroscience, 16(7), 889–897.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Brunner, C., Grillet, M., Sans Dublanc, A., Farrow, K., Lambert, T., Macé, E., Montaldo, G., & Urban, A. (2020). A platform for brain-wide volumetric functional ultrasound imaging and analysis of circuit dynamics in awake mice. Neuron, 108

Brunner, C., Grillet, M., Urban, A., Roska, B., Montaldo, G., & Macé, E. (2021). Whole-brain functional ultrasound imaging in awake head-fixed mice. Nature Protocols, 16

Brunner, C., Lagumersindez Denis, N., Gertz, K., Grillet, M., Montaldo, G., Endres, M., & Urban, A. (2023a). Brain-wide continuous functional ultrasound imaging for real-time monitoring of hemodynamics during ischemic stroke. Journal of Cerebral Blood Flow and Metabolism, 0(0), 0271678X231191600. PMID: 37503862.

Brunner, C., Macé, E., Montaldo, G., & Urban, A. (2022). Quantitative hemodynamic measurements in cortical vessels using functional ultrasound imaging. Frontiers in Neuroscience, 16, 831650.

Article  PubMed  PubMed Central  Google Scholar 

Brunner, C., Montaldo, G., & Urban, A. (2023b). Functional ultrasound imaging of stroke in awake rats. eLife, 12:RP88919.

Bumgarner, J., & Nelson, R. (2022). Open-source analysis and visualization of segmented vasculature datasets with vesselvio. Cell reports methods.

Cohen, E., Deffieux, T., Demené, C., Cohen, L., & Tanter, M. (2018). 3d vessel extraction in the rat brain from ultrasensitive doppler images. Lecture Notes in Bioengineering, pages 81–91

Ergul, A., Alhusban, A., & Fagan, S. C. (2012). Angiogenesis. Stroke, 43(8), 2270–2274.

Article  PubMed  Google Scholar 

Fu, Z., Zhang, J., Lu, Y., Wang, S., Mo, X., He, Y., Wang, C., & Chen, H. (2021). Clinical applications of superb microvascular imaging in the superficial tissues and organs: a systematic review. Academic Radiology, 28(5), 694–703.

Article  PubMed  Google Scholar 

Gambarota, G., Leenders, W., Maass, C., Wesseling, P., Van der Kogel, A., Tellingen, O., & Heerschap, A. (2008). Characterisation of tumor vasculature in mouse brain by uspio contrast-enhanced mri. British Journal of Cancer, 98, 1784–9.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gruber, T., Pan, C., Contreras, R., Wiedemann, T., Morgan, D., Skowronski, A., Lefort, S., Murat, C., Le Thuc, O., Legutko, B., Ruiz-Ojeda, F., Fuente-Fernández, M., García-Villalón, A., González-Hedström, D., Huber, M., szigeti buck, K., Müller, T., Ussar, S., Pfluger, P., & García Cáceres, C. (2021). Obesity-associated hyperleptinemia alters the gliovascular interface of the hypothalamus to promote hypertension. Cell Metabolism, 33

Guerrero Juk, J., Salcudean, S., Mcewen, J., Masri, B., & Nicolaou, S. (2007). Real-time vessel segmentation and tracking for ultrasound imaging applications. IEEE Transactions on Medical Imaging, 26, 1079–90.

Article  Google Scholar 

Guyon, J., Chapouly, C., Andrique, L., Bikfalvi, A., & Daubon, T. (2021). The normal and brain tumor vasculature: Morphological and functional characteristics and therapeutic targeting. Frontiers in Physiology, page 622615

Hilbert, A., Madai, V., Akay, E., Aydin, O., Behland, J., Sobesky, J., Galinovic, I., Khalil, A., Taha, A. A., Wuerfel, J., Dusek, P., Niendorf, T., Fiebach, J., Frey, D., & Livne, M. (2020). Brave-net: Fully automated arterial brain vessel segmentation in patients with cerebrovascular disease. Frontiers in artificial intelligence.

Imbault, M., Chauvet, D., Gennisson, J.-L., Capelle, L., & Tanter, M. (2017). Intraoperative functional ultrasound imaging of human brain activity. Scientific Reports, 7(1), 7304.

Article  PubMed  PubMed Central  Google Scholar 

Lambert, T., Brunner, C., Kil, D., Wuyts, R., D’Hondt, E., Montaldo, G., & Urban, A. (2024). A deep learning classification task for brain navigation in rodents using micro-doppler ultrasound imaging. Heliyon, 10(5), e27432.

Article  PubMed  PubMed Central  Google Scholar 

Lambert, T., Niknejad, H. R., Kil, D., Brunner, C., Nuttin, B., Montaldo, G., & Urban, A. (2024b). Functional ultrasound imaging and neuronal activity: how accurate is the spatiotemporal match? bioRxiv, pages 2024–07

Li, A., You, J., Du, C., & Pan, Y. (2017). Automated segmentation and quantification of oct angiography for tracking angiogenesis progression. Biomedical Optics Express, 8, 5604.

Article  PubMed  PubMed Central  Google Scholar 

Li, L., Ke, Z., Tong, K. Y., & Ying, M. (2010). Evaluation of cerebral blood flow changes in focal cerebral ischemia rats by using transcranial doppler ultrasonography. Ultrasound in Medicine and Biology, 36(4), 595–603.

Article  PubMed  Google Scholar 

Liman, T., & Endres, M. (2012). New vessels after stroke: Postischemic neovascularization and regeneration. Cerebrovascular diseases (Basel, Switzerland), 33, 492–9.

Article  CAS  PubMed  Google Scholar 

Lin, C.-Y., Siow, T., Lin, M.-H., Hsu, Y.-H., Tung, Y.-Y., Jang, T., Recht, L., & Chang, C. (2013). Visualization of rodent brain tumor angiogenesis and effects of antiangiogenic treatment using 3d r2-mra. Angiogenesis, 16

Lowerison, M., Chandra Sekaran, N., Zhang, W., Dong, Z., Chen, X., Llano, D., & Song, P. (2022). Aging-related cerebral microvascular changes visualized using ultrasound localization microscopy in the living mouse. Scientific Reports, 12.

Macé, E., Montaldo, G., Cohen, I., Baulac, M., Fink, M., & Tanter, M. (2011). Functional ultrasound imaging of the brain. Nature Methods, 8, 662–4.

Article  PubMed  Google Scholar 

Macé, E., Montaldo, G., Osmanski, B.-F., Cohen, I., Fink, M., & Tanter, M. (2013). Functional ultrasound imaging of the brain: Theory and basic principles. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 60, 92–506.

Article  Google Scholar 

Macé, E., Montaldo, G., Trenholm, S., Cowan, C., Brignall, A., Urban, A., & Roska, B. (2018). Whole-brain functional ultrasound imaging reveals brain modules for visuomotor integration. Neuron, 100, 1241-1251.e7.

Norman, S. L., Maresca, D., Christopoulos, V. N., Griggs, W. S., Demene, C., Tanter, M., Shapiro, M. G., & Andersen, R. A. (2021). Single-trial decoding of movement intentions using functional ultrasound neuroimaging. Neuron, 109(9), 1554–1566.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Nouhoum, M., Ferrier, J., Osmanski, B.-F., Ialy-Radio, N., Pezet, S., Tanter, M., & Deffieux, T. (2021). A functional ultrasound brain gps for automatic vascular-based neuronavigation. Scientific Reports, 11, 15197.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Nunez-Elizalde, A. O., Krumin, M., Reddy, C. B., Montaldo, G., Urban, A., Harris, K. D., & Carandini, M. (2022). Neural correlates of blood flow measured by ultrasound. Neuron, 110(10), 1631–1640.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pathak, A., Kim, E., Zhang, J., & Jones, M. (2011). Three-dimensional imaging of the mouse neurovasculature with magnetic resonance microscopy. PloS one, 6, e22643.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Provost, J., Garofalakis, A., Sourdon, J., Bouda, D., Berthon, B., Viel, T., Perez-Liva, M., Lussey-Lepoutre, C., Favier, J., Correia, M., amp, et al. (2018). Simultaneous positron emission tomography and ultrafast ultrasound for hybrid molecular, anatomical and functional imaging. Nature Biomedical Engineering, 2(2), 85–94.

Pétrault, O., Petrault, M., Ouk, T., Bordet, R., Berezowski, V., & Bastide, M. (2019). Visceral adiposity links cerebrovascular dysfunction to cognitive impairment in middle-aged mice. Neurobiology of Disease, 130, 104536.

Article  PubMed  Google Scholar 

Rabut, C., Correia, M., Finel, V., Pezet, S., Pernot, M., Deffieux, T., & Tanter, M. (2019). 4d functional ultrasound imaging of whole-brain activity in rodents. Nature methods, 16(10), 994–997.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rabut, C., Norman, S. L., Griggs, W. S., Russin, J. J., Jann, K., Christopoulos, V., Liu, C., Andersen, R. A., & Shapiro, M. G. (2024). Functional ultrasound imaging of human brain activity through an acoustically transparent cranial window. Science Translational Medicine, 16(749), eadj3143

Rungta, R., Zuend, M., Aydin, A.-K., Martineau, E., Boido, D., Weber, B., & Charpak, S. (2021). Diversity of neurovascular coupling dynamics along vascular arbors in layer ii/iii somatosensory cortex. Communications Biology, 4, 855.

Soloukey, S., Verhoef, L., Generowicz, B. S., De Zeeuw, C. I., Koekkoek, S. K., Vincent, A. J., Dirven, C. M., Harhangi, B. S., & Kruizinga, P. (2023). Case report: High-resolution, intra-operative \(\mu \)doppler-imaging of spinal cord hemangioblastoma. Frontiers in Surgery, 10, 1153605.

Article  PubMed  PubMed Central  Google Scholar 

Szu, J., & Obenaus, A. (2021). Cerebrovascular phenotypes in mouse models of alzheimer’s disease. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism, 41, 271678X21992462

Takahashi, D., Hady, A., Zhang, Y., Liao, D., Montaldo, G., Urban, A., & Ghazanfar, A. (2021a). Social-vocal brain networks in a non-human primate. bioRxiv.

Takahashi, D. Y., El Hady, A., Zhang, Y. S., Liao, D. A., Montaldo, G., Urban, A., & Ghazanfar, A. A. (2021b). Social-vocal brain networks in a non-human primate. BioRxiv, pages 2021–12.

Tetteh, G., Efremov, V., Forkert, N. D., Schneider, M., Kirschke, J., Weber, B., Zimmer, C., Piraud, M., & Menze, B. (2020). Deepvesselnet: Vessel segmentation, centerline prediction, and bifurcation detection in 3-d angiographic volumes. Frontiers in Neuroscience, 14.

Tierney, J., Walsh, K., Griffith, H., Baker, J., Brown, D. B., & Byram, B. (2019). Combining slow flow techniques with adaptive demodulation for improved perfusion ultrasound imaging without contrast. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 66(5), 834–848.

Article  PubMed  PubMed Central  Google Scholar 

Todorov, M., Paetzold, J., Schoppe, O., Tetteh, G., Shit, S., Efremov, V., Todorov-Völgyi, K., Düring, M., Dichgans, M., Piraud, M., Menze, B., & Ertürk, A. (2020). Machine learning analysis of whole mouse brain vasculature. Nature Methods, 17, 1–8.

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