Novel edible multi-epitope vaccine construct against Enterococcus faecalis

Aboul-Ata AA, Vitti A, Nuzzaci M, El-Attar AK, Piazzolla G, Tortorella C, et al. Plant-based vaccines: novel and low-cost possible route for Mediterranean innovative vaccination strategies. Adv Virus Res. 2014;89:1–37. https://doi.org/10.1016/b978-0-12-800172-1.00001-x.

Article  PubMed  Google Scholar 

Agudelo Higuita NI, Huycke MM. Enterococcal disease, epidemiology, and implications for treatment. In: Gilmore MS, Clewell DB, Ike Y, Shankar N, editors. Enterococci: from commensals to leading causes of drug resistant infection. Boston: Massachusetts Eye and Ear Infirmary; 2014.

Google Scholar 

Anderson AC, Jonas D, Huber I, Karygianni L, Wölber J, Hellwig E, et al. Enterococcus faecalis from food, clinical specimens, and oral sites: prevalence of virulence factors in association with biofilm formation. Front Microbiol. 2015;6:1534. https://doi.org/10.3389/fmicb.2015.01534.

Article  PubMed  Google Scholar 

Ayobami O, Willrich N, Reuss A, Eckmanns T, Markwart R. The ongoing challenge of vancomycin-resistant Enterococcus faecium and Enterococcus faecalis in Europe: an epidemiological analysis of bloodstream infections. Emerg Microbes Infect. 2020;9(1):1180–93. https://doi.org/10.1080/22221751.2020.1769500.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Baseer S, Ahmad S, Ranaghan KE, Azam SS. Towards a peptide-based vaccine against Shigella sonnei: a subtractive reverse vaccinology based approach. Biologicals. 2017;50:87–99. https://doi.org/10.1016/j.biologicals.2017.08.004.

Article  PubMed  CAS  Google Scholar 

Bhatia S, Dahiya R. Chapter 9—edible vaccines. In: Bhatia S, Sharma K, Dahiya R, Bera T, editors. Modern applications of plant biotechnology in pharmaceutical sciences. Boston: Academic Press; 2015. p. 333–43.

Chapter  Google Scholar 

Bublil EM, Freund NT, Mayrose I, Penn O, Roitburd-Berman A, Rubinstein ND, et al. Stepwise prediction of conformational discontinuous B-cell epitopes using the Mapitope algorithm. Proteins. 2007;68(1):294–304. https://doi.org/10.1002/prot.21387.

Article  PubMed  CAS  Google Scholar 

Canouï E, Launay O. History and principles of vaccination. Rev Mal Respir. 2019;36(1):74–81. https://doi.org/10.1016/j.rmr.2018.02.015.

Article  PubMed  Google Scholar 

CDC A. Antibiotic resistance threats in the United States. Washington, DC: US Department of Health and Human Services; 2019.

Google Scholar 

Chakraborty S, Syal K, Bhattacharyya R, Banerjee D. Vitamin deficiency and tuberculosis: need for urgent clinical trial for management of tuberculosis. J Nutr Health Food Sci. 2014;2(2):1–6. https://doi.org/10.15226/jnhfs.2014.00118.

Article  Google Scholar 

Chang JD, Wallace AG, Foster EE, Kim SJ. Peptidoglycan compositional analysis of Enterococcus faecalis biofilm by stable isotope labeling by amino acids in a bacterial culture. Biochemistry. 2018;57(7):1274–83. https://doi.org/10.1021/acs.biochem.7b01207.

Article  PubMed  CAS  Google Scholar 

Chen L, Yang J, Yu J, Yao Z, Sun L, Shen Y, et al. VFDB: a reference database for bacterial virulence factors. Nucleic Acids Res. 2005;33(Database issue):D325–8. https://doi.org/10.1093/nar/gki008.

Article  PubMed  CAS  Google Scholar 

Craig DB, Dombkowski AA. Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins. BMC Bioinform. 2013;14:346. https://doi.org/10.1186/1471-2105-14-346.

Article  CAS  Google Scholar 

Desai DV, Kulkarni-Kale U. T-cell epitope prediction methods: an overview. Methods Mol Biol. 2014;1184:333–64. https://doi.org/10.1007/978-1-4939-1115-8_19.

Article  PubMed  CAS  Google Scholar 

Dey J, Mahapatra SR, Lata S, Patro S, Misra N, Suar M. Exploring Klebsiella pneumoniae capsule polysaccharide proteins to design multiepitope subunit vaccine to fight against pneumonia. Expert Rev Vaccines. 2022;21(4):569–87. https://doi.org/10.1080/14760584.2022.2021882.

Article  PubMed  CAS  Google Scholar 

Dhanda SK, Vir P, Raghava GP. Designing of interferon-gamma inducing MHC class-II binders. Biol Direct. 2013;8:30. https://doi.org/10.1186/1745-6150-8-30.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Díaz-Dinamarca DA, Salazar ML, Castillo BN, Manubens A, Vasquez AE, Salazar F, et al. Protein-based adjuvants for vaccines as immunomodulators of the innate and adaptive immune response: current knowledge, challenges, and future opportunities. Pharmaceutics. 2022;14(8):1671. https://doi.org/10.3390/pharmaceutics14081671.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Dimitrov I, Naneva L, Doytchinova I, Bangov I. AllergenFP: allergenicity prediction by descriptor fingerprints. Bioinformatics. 2013;30(6):846–51. https://doi.org/10.1093/bioinformatics/btt619.

Article  PubMed  CAS  Google Scholar 

Dong OX, Yu S, Jain R, Zhang N, Duong PQ, Butler C, et al. Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9. Nat Commun. 2020;11(1):1178. https://doi.org/10.1038/s41467-020-14981-y.

Article  ADS  PubMed  PubMed Central  CAS  Google Scholar 

Doytchinova IA, Flower DR. VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines. BMC Bioinform. 2007;8:4. https://doi.org/10.1186/1471-2105-8-4.

Article  CAS  Google Scholar 

Esmail MAM, Abdulghany HM, Khairy RM. Prevalence of multidrug-resistant Enterococcus faecalis in hospital-acquired surgical wound infections and bacteremia: concomitant analysis of antimicrobial resistance genes. Infect Dis: Res Treat. 2019;12:1178633719882929. https://doi.org/10.1177/1178633719882929.

Article  Google Scholar 

Ferguson DM, Talavera GN, Hernández LA, Weisberg SB, Ambrose RF, Jay JA. Virulence genes among Enterococcus faecalis and Enterococcus faecium isolated from coastal beaches and human and nonhuman sources in Southern California and Puerto Rico. J Pathog. 2016;2016:3437214. https://doi.org/10.1155/2016/3437214.

Article  PubMed  PubMed Central  Google Scholar 

Flores-Mireles AL, Pinkner JS, Caparon MG, Hultgren SJ. EbpA vaccine antibodies block binding of Enterococcus faecalis to fibrinogen to prevent catheter-associated bladder infection in mice. Sci Transl Med. 2014;6(254):254ra127. https://doi.org/10.1126/scitranslmed.3009384.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Flores-Mireles AL, Walker JN, Caparon M, Hultgren SJ. Urinary tract infections: epidemiology, mechanisms of infection and treatment options. Nat Rev Microbiol. 2015;13(5):269–84. https://doi.org/10.1038/nrmicro3432.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Forouharmehr A, Banan A, Mousavi SM, Jaydari A. Development of a novel multi-epitope vaccine candidate against Streptococcus iniae infection in fish: an immunoinformatics study. Arch Razi Inst. 2022;77(1):45–56. https://doi.org/10.22092/ari.2021.353377.1601.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Gasteiger E, Hoogland C, Gattiker A, Duvaud SE, Wilkins MR, Appel RD, et al. Protein identification and analysis tools on the ExPASy server. In: Walker JM, editor., et al., The proteomics protocols handbook. Totowa, NJ: Humana Press; 2005. p. 571–607.

Chapter  Google Scholar 

Gök ŞM, Dağı HT, Kara F, Arslan U, Fındık D. Investigation of antibiotic resistance and virulence factors of Enterococcus faecium and Enterococcus faecalis strains isolated from clinical samples. Mikrobiyol Bul. 2020;54(1):26–39. https://doi.org/10.5578/mb.68810.

Article  PubMed  Google Scholar 

Goumari MM, Farhani I, Nezafat N, Mahmoodi S. Multi-epitope vaccines (MEVs), as a novel strategy against infectious diseases. Curr Proteom. 2020;17(5):354–64.

Article  CAS  Google Scholar 

Guan ZJ, Guo B, Huo YL, Guan ZP, Dai JK, Wei YH. Recent advances and safety issues of transgenic plant-derived vaccines. Appl Microbiol Biotechnol. 2013;97(7):2817–40. https://doi.org/10.1007/s00253-012-4566-2.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Guimarães LE, Baker B, Perricone C, Shoenfeld Y. Vaccines, adjuvants and autoimmunity. Pharmacol Res. 2015;100:190–209. https://doi.org/10.1016/j.phrs.2015.08.003.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Guiton PS, Hannan TJ, Ford B, Caparon MG, Hultgren SJ. Enterococcus faecalis overcomes foreign body-mediated inflammation to establish urinary tract infections. Infect Immun. 2013;81(1):329–39. https://doi.org/10.1128/iai.00856-12.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Gunasekaran B, Gothandam KM. A review on edible vaccines and their prospects. Braz J Med Biol Res. 2020;53:e8749.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Gupta S, Kapoor P, Chaudhary K, Gautam A, Kumar R, Raghava GP. In silico approach for predicting toxicity of peptides and proteins. PLoS ONE. 2013;8(9): e73957. https://doi.org/10.1371/journal.pone.0073957.

Article  ADS  PubMed  PubMed Central  CAS  Google Scholar 

Guruprasad K, Reddy BVB, Pandit MW. Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Eng Des Sel. 1990;4(2):155–61. https://doi.org/10.1093/protein/4.2.155.

Article  CAS 

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