Aesaert S, Impens L, Coussens G, Van Lerberge E, et al. Optimized Transformation and Gene Editing of the B104 Public Maize Inbred by Improved Tissue Culture and Use of Morphogenic Regulators. Front Plant Sci. 2022;13: 883847.

Article  PubMed  PubMed Central  Google Scholar 

Ali Z, Abul-Faraj A, Piatek M, Mahfouz MM. Activity and specificity of TRV mediated gene editing in plants. Plant Signal Behav. 2015;10(10): e1044191.

Article  PubMed  PubMed Central  Google Scholar 

Ali Z, Abul-faraj A, Li L, Ghosh N, Piatek M, Mahjoub A, Aouida M, Piatek A, Baltes NJ, Voytas DF, et al. Efficient virus-mediated genome editing in plants using the CRISPR/Cas9 system. Mol Plant. 2015;8:1288–91.

Article  CAS  PubMed  Google Scholar 

Altpeter F, Baisakh N, Beachy R, Bock R, Capell T, Christou P, Daniell H, Datta K, Datta S, Dix PJ, Fauquet C, et al. Particle bombardment and the genetic enhancement of crops: myths and realities. Mol Breeding. 2005;15(3):305–27.

Article  Google Scholar 

Amin NA, Ahmad N, Wu N, Pu X, Ma T, Du Y, Bo X, Wang N, Sharif R, Wang P. CRISPR-Cas9 mediated targeted disruption of FAD2–2 microsomal omega-6 desaturase in soybean (Glycine max L.). BMC Biotechnol. 2020;20(1):42.

Article  PubMed  PubMed Central  Google Scholar 

Aznar-Moreno J, Durrett T. Simultaneous targeting of multiple gene homeologs to alter seed oil production in Camelina sativa. Plant Cell Physiol. 2017;58:1260–7.

Article  CAS  PubMed  Google Scholar 

Aznar-Moreno JA, Mukherjee T, Morley SA, et al. Suppression of SDP1 Improves Soybean Seed Composition by Increasing Oil and Reducing Undigestible Oligosaccharides. Front Plant Sci. 2022;13: z863254.

Article  Google Scholar 

Bai M, Yuan J, Kuang H, Gong P, Li S, Zhang Z, Liu B, Sun J, Yang M, Yang L. Generation of a multiplex mutagenesis population via pooled CRISPR-Cas9 in soya bean. Plant Biotechnol J. 2020;18:721–31.

Article  CAS  PubMed  Google Scholar 

Bao A, Chen H, Chen L, Chen S, et al. CRISPR/Cas9-mediated targeted mutagenesis of GmSPL9 genes alters plant architecture in soybean. BMC Plant Biol. 2019; 19(1): 131

Baltes NJ, Gil-Humanes J, Voytas DF. 2017 Chapter one – genome engineering and agriculture: opportunities and challenges. In: Weeks DP, Yang B (eds) Progress in Molecular Biology and Translational Science, Academic Press, 149, 1–26.

Barton KA, Binns AN, Matzke AJM, Chilton M. Regeneration of intact tobacco plants containing full length copies of genetically engineered T-DNA, and transmission of T-DNA to R1 progeny. Cell. 1983;32(4):1033–43.

Article  CAS  PubMed  Google Scholar 

Baset A, Finch RP, Cocking EC. Plant regeneration from protoplasts of wild rice (Oryza rufipogon Griff.). Plant Cell Rep. 1991;10(4):200–3.

Article  CAS  PubMed  Google Scholar 

Bastaki NK, Cullis CA. Floral-dip transformation of flax (Linum usitatissimum) to generate transgenic progenies with a high transformation rate. Journal of Vizualized Experiments. 2014;94: e52189.

Google Scholar 

Bayer GY, Yemets AI, Blume YB. Obtaining the transgenic lines of finger millet Eleusine coracana (L.) with dinitroaniline resistance. Cytol Genet. 2014;48:139–44.

Article  Google Scholar 

Bhowmik P, Ellison E, Polley B, Bollina V, Kulkarni M, Ghanbarnia K, Song H, Gao C, Voytas DF, Kagale S. Targeted mutagenesis in wheat microspores using CRISPR/Cas9. Sci Rep. 2018;8(1):1–10.

Article  CAS  Google Scholar 

Bittencourt PAL, Csanyi A, Jenes B. Evaluation of different parameters and their influence on the PEG (polyethylene glycol) mediated gene transfer into rice (Oryza sativa L.) protoplasts. Cereal Res Communications. 1995;23:359–65.

Google Scholar 

Boutilier K, Offringa R, Sharma VK, Kieft H, Ouellet T, Zhang L, et al. Ectopic expression of BABY BOOM triggers conversion from vegetative to embryonic growth. Plant Cell. 2002;14:1737–49.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Braatz J, Harloff HJ, Mascher M, Stein N, Himmelbach A, Jung C. CRISPRCas9 targeted mutagenesis leads to simultaneous modification of different homoeologous gene copies in polyploid oilseed rape (Brassica napus). Plant Physiol. 2017;174:935–42.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Budhagatapalli N, Halbach T, Hiekel S, Büchner H, Müller A, Kumlehn J. Site-directed mutagenesis in bread and durum wheat via pollination by cas9/guide RNA-transgenic maize used as haploidy inducer. Plant Biotechnol J. 2020;18(12):2376–8.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Butler NM, Baltes NJ, Voytas DF, Douches DS. Geminivirus-mediated genome editing in potato (Solanum tuberosum L.) using sequence-specific nucleases. Front Plant Sci. 2016;7:1045.

Article  PubMed  PubMed Central  Google Scholar 

Cai Y, Chen L, Liu X, Sun S, Wu C, Jiang B, Han T, Hou W. CRISPR/Cas9- mediated genome editing in soybean hairy roots. PLoS ONE. 2015;10: e0136064.

Article  PubMed  PubMed Central  Google Scholar 

Cai Y, Chen L, Liu X, Guo C, Sun S, Wu C, Jiang B, Han T, Hou W. CRISPR/Cas9-mediated targeted mutagenesis of GmFT2a delays flowering time in soya bean. Plant Biotechnol J. 2018;16:176–85.

Article  CAS  PubMed  Google Scholar 

Cao X, Xie H, Song M, et al. Extremely simplified cut-dip-budding method for genetic transformation and gene editing in Taraxacum kok-saghyz. The Innovation Life. 2023;1(3): 100040.

Article  Google Scholar 

Ceasar A. Genome-editing in millets: current knowledge and future perspectives. Mol Biol Rep. 2022;49(1):773–81.

Article  CAS  PubMed  Google Scholar 

Ceasar SA, Ignacimuthu S. Agrobacterium-mediated transformation of finger millet (Eleusine coracana (L.) Gaertn.) using shoot apex explants. Plant Cell Rep. 2011;30:1759–70.

Article  PubMed  Google Scholar 

Ceasar SA, Baker A, Ignacimuthu S. Functional characterization of thePHT1 family transporters of foxtail millet with development of a novel Agrobacterium-mediated transformation procedure. Sci Rep. 2017;7:14064.

Article  PubMed  PubMed Central  Google Scholar 

Cermak T, Baltes NJ, Cegan R, Zhang Y, Voytas DF. High-frequency, precise modification of the tomato genome. Genome Biol. 2015;16(1):232.

Article  PubMed  PubMed Central  Google Scholar 

Chaudhury D, Madanpotra S, Jaiwal R, Saini R, Kumar PA, Jaiwal PK. Agrobacterium tumefaciens-mediated high frequency genetic transformation of an Indian cowpea (Vigna unguiculata L. Walp.) cultivar and transmission of transgenes into progeny. Plant Sci. 2007;172(4):692–700.

Article  CAS  Google Scholar 

Chen K, Wang Y, Zhang R, Zhang H, Gao. CRISPR/Cas genome editing and precision plant breeding in agriculture. Annu Rev Plant Biol. 2019;70:667–97.

Article  CAS  PubMed  Google Scholar 

Chen Y, Fu M, Li H, Wang L, Liu R, Liu Z, Zhang X, Jin S. High-oleic acid content, nontransgenic allotetraploid cotton (Gossypium hirsutum L.) generated by knockout of GhFAD2 genes with CRISPR/Cas9 system. Plant Biotechnol J. 2021;19(3):424.

Article  CAS  PubMed  Google Scholar 

Chen X, Lu X, Shu N et al. Targeted mutagenesis in cotton (Gossypium hirsutum L) using the CRISPR/Cas9 system. Sci Rep. 2017; 7: 44304.

Cheng Z, Sun Y, Yang S, et al. Establishing in planta haploid inducer line by edited SiMTL in foxtail millet (Setaria italica). Plant Biotechnol J. 2021;19(6):1089–91.

Article  PubMed  PubMed Central  Google Scholar 

Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998;16(6):735–43.

Article  CAS  PubMed  Google Scholar 

Cody WB, Scholthof HB. Plant virus vectors 3.0: transitioning into synthetic genomics. Annu Rev Phytopathol. 2019;57(1):211–30.

Article  CAS  PubMed  Google Scholar 

Cody WB, Scholthof HB, Mirkov TE. Multiplexed gene editing and protein overexpression using a tobacco mosaic virus viral vector. Plant Physiol. 2017;175(1):23–35.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Cunningham F, Goh N, Demirer G, Matos J, Landry M. Nanoparticle-mediated delivery towards advancing plant genetic engineering. Trends Biotechnol. 2018;36(9):882–97.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dai C, Li Y, Li L, Du Z, Lin S, Tian X, Li S, Yang B, Yao W, Wang J. An efficient Agrobacterium-mediated transformation method using hypocotyl as explants for Brassica napus. Mol Breeding. 2020;40:1–13.

Article  Google Scholar 

Dalakouras A, Papadopoulou KK. Epigenetic Modifications: An unexplored facet of exogenous RNA application in plants. Plants. 2020;9:673.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dalakouras A, Vlachostergios D, Manavella P. Epigenetic approaches to crop breeding: Current status and perspectives. J Exp Bot. 2021;72:5356–71.

Article  CAS  PubMed  Google Scholar 

Debernardi J, Tricoli D, Ercoli M, Hayta S, Ronald P, Palatnik J, Dubcovsky J. A GRF-GIF chimeric protein improves the regeneration efficiency of transgenic plants. Nat Biotechnol. 2020;38(11):1274–9.

Article  CAS  PubMed  PubMed Central