Somatic Mutation Patterns at Ig and Non-Ig Loci

AbbreviationsA

adenosine (in RNA) and deoxyadenosine (in DNA)

A>>T

mutations in DNA at A exceed mutations at T

A-to-I

adenosine to inosine RNA editing

ADAR

adenosine deaminase acting on RNA

APOBEC

apolipoprotein B mRNA-editing, catalytic polypeptide

AID

activation-induced deaminase

APE

apurinic/apyrimidinic endonuclease

C

cytidine (in RNA) and deoxcytidine (in DNA)

COSMIC

catalogue of somatic mutations in cancer (https://cancer.sanger.ac.uk/cosmic/signatures)

G>>C

mutations in DNA at G exceed mutations at C

NER

nucleotide excision repair

NGS

next generation sequencing

NTS

non-transcribed strand

PCNA

proliferating cell nuclear antigen

PCR

polymerase chain reaction

R

purine base (e.g., A and G)

SBS

single base substitution

TSRT

target site reverse transcription

W

weak (W) base (e.g., A and T)

Y

pyrimidine base (e.g., C and T)

Keywords

Somatic hypermutation

Strand biased mutations

Immunoglobulin (Ig) Genes

TP53

DNA Polymerase-eta

DNA Polymerase-theta

Reverse transcriptase

PCR recombinant artefacts

Data availability

This is a historical Perspective review of previous published data

© 2023 The Author(s). Published by Elsevier B.V.

留言 (0)

沒有登入
gif