Development of a novel integrated isothermal amplification system for detection of bacteria-spiked blood samples

Ahmad T, Ullah S, Moosa A, Liu Y, Chengrong N, Shujian H (2020) First Report of Pre-harvest Soft Rot of Peach Fruit (Prunus persica) caused by Enterobacter mori in China. Plant Dis Aug 18. https://doi.org/10.1094/PDIS-06-20-1285-PDN

Allerberger F, Kern WV (2020) Bacterial bloodstream Infection. Clin Microbiol Infect 26:140–141. https://doi.org/10.1016/j.cmi.2019.10.004

Article  CAS  PubMed  Google Scholar 

Barbaccia P, Francesca N, Gerlando RD, Busetta G, Moschetti G, Gaglio R, Settanni L (2020) Biodiversity and dairy traits of indigenous milk lactic acid bacteria grown in presence of the main grape polyphenols. FEMS Microbiol Lett 367. https://doi.org/10.1093/femsle/fnaa066

Behrmann O, Bachmann I, Spiegel M, Schramm M, Abd El Wahed A, Dobler G, Dame G, Hufert FT (2020) Rapid Detection of SARS-CoV-2 by low volume real-time single tube reverse transcription recombinase polymerase amplification using an Exo probe with an internally linked Quencher (Exo-IQ). Clin Chem 66:1047–1054. https://doi.org/10.1093/clinchem/hvaa116

Article  PubMed  Google Scholar 

Bogut A, Magryś A (2021) The road to success of coagulase-negative staphylococci: clinical significance of small colony variants and their pathogenic role in persistent Infections. Eur J Clin Microbiol Infect Dis 40:2249–2270. https://doi.org/10.1007/s10096-021-04315-1

Article  CAS  PubMed  PubMed Central  Google Scholar 

Boolchandani M, D’Souza AW, Dantas G (2019) Sequencing-based methods and resources to study antimicrobial resistance. Nat Rev Genet 20:356–370. https://doi.org/10.1038/s41576-019-0108-4

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chakravorty S, Simmons AM, Rowneki M, Parmar H, Cao Y, Ryan J, Banada PP, Deshpande S, Shenai S, Gall A, Glass J, Krieswirth B, Schumacher SG, Nabeta P, Tukvadze N, Rodrigues C, Skrahina A, Tagliani E, Cirillo DM, Davidow A, Denkinger CM, Persing D, Kwiatkowski R, Jones M, Alland D (2017) The New Xpert MTB/RIF Ultra: improving detection of Mycobacterium tuberculosis and Resistance to Rifampin in an assay suitable for point-of-care testing. mBio 8. https://doi.org/10.1128/mBio.00812-17

Chen J, Xu Y, Yan H, Zhu Y, Wang L, Zhang Y, Lu Y, Xing W (2018) Sensitive and rapid detection of pathogenic bacteria from urine samples using multiplex recombinase polymerase amplification. Lab Chip 18:2441–2452. https://doi.org/10.1039/c8lc00399h

Article  CAS  PubMed  Google Scholar 

Chen N, Si Y, Li G, Zong M, Zhang W, Ye Y, Fan L (2021) Development of a loop-mediated isothermal amplification assay for the rapid detection of six common respiratory viruses. Eur J Clin Microbiol Infect Dis 40:2525–2532. https://doi.org/10.1007/s10096-021-04300-8

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chiarelli A, Cabanel N, Rosinski-Chupin I, Zongo PD, Naas T, Bonnin RA, Glaser P (2020) Diversity of mucoid to non-mucoid switch among carbapenemase-producing Klebsiella pneumoniae. BMC Microbiol 20:325. https://doi.org/10.1186/s12866-020-02007-y

Article  CAS  PubMed  PubMed Central  Google Scholar 

Crannell ZA, Rohrman B, Richards-Kortum R (2014) Equipment-free incubation of recombinase polymerase amplification reactions using body heat. PLoS ONE 9:e112146. https://doi.org/10.1371/journal.pone.0112146

Article  CAS  PubMed  PubMed Central  Google Scholar 

Craw P, Balachandran W (2012) Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review. Lab Chip 12:2469–2486. https://doi.org/10.1039/c2lc40100b

Article  CAS  PubMed  Google Scholar 

Cui J, Li M, Cui J, Wang J, Qiang X, Liang Z (2022) The proportion, species distribution and dynamic trends of bloodstream Infection cases in a tertiary hospital in China, 2010–2019. Infection 50:121–130. https://doi.org/10.1007/s15010-021-01649-y

Article  CAS  PubMed  Google Scholar 

Gadsby NJ, McHugh MP, Russell CD, Mark H, Conway Morris A, Laurenson IF, Hill AT, Templeton KE (2015) Development of two real-time multiplex PCR assays for the detection and quantification of eight key bacterial pathogens in Lower Respiratory Tract Infections. Clin Microbiol Infect 21:788e1. -788.e13

Article  Google Scholar 

Ghosh C, Jain I, Shinde CP, Chakraborty BS (2012) Rapid and sensitive liquid chromatography/tandem mass spectrometry method for simultaneous determination of enalapril and its major metabolite enalaprilat, in human plasma: application to a bioequivalence study. Drug Test Anal 4:94–103. https://doi.org/10.1002/dta.241

Article  CAS  PubMed  Google Scholar 

Hawkins S, Guest PC (2017) Multiplex analyses using real-time quantitative PCR. Methods Mol Biol 1546:125–133. https://doi.org/10.1007/978-1-4939-6730-8_8

Article  CAS  PubMed  Google Scholar 

Helfrich YR, Maier LE, Cui Y, Fisher GJ, Chubb H, Fligiel S, Sachs D, Varani J, Voorhees J (2015) Clinical, Histologic, and Molecular Analysis of Differences between Erythematotelangiectatic Rosacea and Telangiectatic Photoaging. JAMA Dermatol 151:825–836. https://doi.org/10.1001/jamadermatol.2014.4728

Article  PubMed  Google Scholar 

Ivanov AV, Safenkova IV, Zherdev AV, Dzantiev BB (2021) Recombinase polymerase amplification assay with and without nuclease-dependent-labeled Oligonucleotide Probe. Int J Mol Sci 22. https://doi.org/10.3390/ijms222111885

Jiang L, Li X, Gu R, Mu D (2020a) Nanoparticles-based Biosensor coupled with Multiplex Loop-mediated isothermal amplification for detection of Staphylococcus aureus and Identification of Methicillin-Resistant S. Aureus. Infect Drug Resist 13:1251–1262. https://doi.org/10.2147/IDR.S243881

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jiang L, Ching P, Chao CC, Dumler JS, Ching WM (2020b) Development of a sensitive and Rapid Recombinase Polymerase Amplification Assay for Detection of Anaplasma phagocytophilum. J Clin Microbiol 58. https://doi.org/10.1128/JCM.01777-19

Kolesnichenko SI, Lavrinenko AV, Akhmaltdinova LL (2021) Bloodstream Infection etiology among children and adults. Int J Microbiol 2021:6657134. https://doi.org/10.1155/2021/6657134

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kong M, Li Z, Wu J, Hu J, Sheng Y, Wu D, Lin Y, Li M, Wang X, Wang S (2019) A wearable microfluidic device for rapid detection of HIV-1 DNA using recombinase polymerase amplification. Talanta 205:120155. https://doi.org/10.1016/j.talanta.2019.120155

Article  CAS  PubMed  Google Scholar 

Koo KM, Wee EJ, Trau M (2016) Colorimetric TMPRSS2-ERG Gene Fusion detection in Prostate Cancer urinary samples via recombinase polymerase amplification. Theranostics 6:1415–1424. https://doi.org/10.7150/thno.15250

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kumar A, Roberts D, Wood KE, Light B, Parrillo JE, Sharma S, Suppes R, Feinstein D, Zanotti S, Taiberg L, Gurka D, Kumar A, Cheang M (2006) Duration of hypotension before initiation of effective antimicrobial therapy is the critical determinant of survival in human septic shock. Crit Care Med 34:1589–1596. https://doi.org/10.1097/01.CCM.0000217961.75225.E9

Article  PubMed  Google Scholar 

Li J, Macdonald J (2015) Advances in isothermal amplification: novel strategies inspired by biological processes. Biosens Bioelectron 64:196–211. https://doi.org/10.1016/j.bios.2014.08.069

Article  CAS  PubMed  Google Scholar 

Li J, Macdonald J, von Stetten F (2018) Review: a comprehensive summary of a decade development of the recombinase polymerase amplification. Analyst 144:31–67. https://doi.org/10.1039/c8an01621f

Article  CAS  PubMed  Google Scholar 

Lisowska-Łysiak K, Lauterbach R, Międzobrodzki J, Kosecka-Strojek M (2021) Epidemiology and Pathogenesis of Staphylococcus Bloodstream Infections in humans: a review. Pol J Microbiol 70:13–23. https://doi.org/10.33073/pjm-2021-005

Article  PubMed  PubMed Central  Google Scholar 

Martinez RM, Wolk DM (2016) Bloodstream Infections. Microbiol Spectr 4. https://doi.org/10.1128/microbiolspec.DMIH2-0031-2016

McQuillan JS, Wilson MW (2021) Recombinase polymerase amplification for fast, selective, DNA-based detection of faecal indicator Escherichia Coli. Lett Appl Microbiol 72:382–389. https://doi.org/10.1111/lam.13427

Article  CAS  PubMed  Google Scholar 

Mendes RE, Sader HS, Castanheira M, Flamm RK (2018) Distribution of main Gram-positive pathogens causing bloodstream Infections in United States and European hospitals during the SENTRY Antimicrobial Surveillance Program (2010–2016): concomitant analysis of oritavancin in vitro activity. J Chemother 30:280–289. https://doi.org/10.1080/1120009X.2018.1516272

Article  CAS  PubMed  Google Scholar 

Meyler KL, Meehan M, Bennett D, Cunney R, Cafferkey M (2012) Development of a diagnostic real-time polymerase chain reaction assay for the detection of invasive Haemophilus influenzae in clinical samples. Diagn Microbiol Infect Dis 74:356–362. https://doi.org/10.1016/j.diagmicrobio.2012.08.018

Article  CAS  PubMed  Google Scholar 

Mizukami K, Iwasaki Y, Kawakami E, Hirata M, Kamatani Y, Matsuda K, Endo M, Sugano K, Yoshida T, Murakami Y, Nakagawa H, Spurdle AB, Momozawa Y (2020) Genetic characterization of Pancreatic cancer patients and prediction of carrier status of germline pathogenic variants in cancer-predisposing genes. EBioMedicine 60:103033. https://doi.org/10.1016/j.ebiom.2020.103033

Article  PubMed  PubMed Central  Google Scholar 

Natoli ME, Chang MM, Kundrod KA, Coole JB, Airewele GE, Tubman VN, Richards-Kortum RR (2021) Allele-specific recombinase polymerase amplification to detect Sickle Cell Disease in Low-Resource settings. Anal Chem 93:4832–4840. https://doi.org/10.1021/acs.analchem.0c04191

Article  CAS  PubMed  PubMed Central  Google Scholar 

Otašević S, Momčilović S, Stojanović NM, Skvarč M, Rajković K, Arsić-Arsenijević V (2018) Non-culture based assays for the detection of fungal pathogens. J Mycol Med 28:236–248. https://doi.org/10.1016/j.mycmed.2018.03.001

Article  PubMed  PubMed Central  Google Scholar 

Palavecino EL (2020) Rapid Methods for Detection of MRSA in clinical specimens. Methods Mol Biol 2069:29–45. https://doi.org/10.1007/978-1-4939-9849-4_2

Article  PubMed  Google Scholar 

Peri AM, Harris P, Paterson DL (2022) Culture-independent detection systems for bloodstream Infection. Clin Microbiol Infect 28:195–201. https://doi.org/10.1016/j.cmi.2021.09.039

Article  PubMed 

Comments (0)

No login
gif