Ali M, et al. Exploring dengue genome to construct a multi-epitope based subunit vaccine by utilizing immunoinformatics approach to battle against dengue infection. Sci Rep. 2017;7(1):1–13.
Holmes EC, Twiddy SS. The origin, emergence and evolutionary genetics of dengue virus. Infect Genet Evol. 2003;3(1):19–28.
Mukhtar MU, et al. Seasonal distribution and container preference ratio of the dengue fever vector (Aedes aegypti, Diptera: Culicidae) in Rawalpindi, Pakistan. J Med Entomol. 2018;55(4):1011–5.
Mukhtar M, Wajeeha AW, Bibi N. Engineering Modified mRNA-Based Vaccine against Dengue Virus Using Computational and Reverse Vaccinology Approaches. Int J Mol Sci. 2022;23(22):13911.
Article CAS PubMed PubMed Central Google Scholar
Idris F, Ting DHR, Alonso S. An update on dengue vaccine development, challenges, and future perspectives. Expert Opin Drug Discovery. 2021;16(1):47–58.
Hertz T, et al. Antibody epitopes identified in critical regions of dengue virus nonstructural 1 protein in mouse vaccination and natural human infections. J Immunol. 2017;198(10):4025–35.
Article CAS PubMed Google Scholar
Rodenhuis-Zybert IA, Wilschut J, Smit JM. Dengue virus life cycle: viral and host factors modulating infectivity. Cell Mol Life Sci. 2010;67(16):2773–86.
Article CAS PubMed Google Scholar
Gubler DJ, Clark GG. Dengue/dengue hemorrhagic fever: the emergence of a global health problem. Emerg Infect Dis. 1995;1(2):55.
Article CAS PubMed PubMed Central Google Scholar
Thomas R, et al. Associations of human leukocyte antigen with neutralizing antibody titers in a tetravalent dengue vaccine phase 2 efficacy trial in Thailand. Hum Immunol. 2022;83(1):53–60.
Article CAS PubMed Google Scholar
Reginald K, et al. Development of peptide vaccines in dengue. Curr Pharm Des. 2018;24(11):1157–73.
Article CAS PubMed PubMed Central Google Scholar
Doytchinova IA, Flower DR. VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines. BMC Bioinf. 2007;8(1):1–7.
Dhanda SK, et al. IEDB-AR: immune epitope database—analysis resource in 2019. Nucleic Acids Res. 2019;47(W1):W502–6.
Article CAS PubMed PubMed Central Google Scholar
Jalal K, et al. Identification of vaccine and drug targets in Shigella dysenteriae sd197 using reverse vaccinology approach. Sci Rep. 2022;12(1):1–19.
Patronov A, Doytchinova I. T-cell epitope vaccine design by immunoinformatics. Open biology. 2013;3(1):120139.
Article PubMed PubMed Central Google Scholar
Tanu AR, et al. Identification and validation of T-cell epitopes in outer membrane protein (OMP) of Salmonella typhi. Bioinformation. 2014;10(8):480.
Article PubMed PubMed Central Google Scholar
Solanki V, Tiwari M, Tiwari V. Prioritization of potential vaccine targets using comparative proteomics and designing of the chimeric multi-epitope vaccine against Pseudomonas aeruginosa. Sci Rep. 2019;9(1):5240.
Article PubMed PubMed Central Google Scholar
Solanki V, Tiwari V. Subtractive proteomics to identify novel drug targets and reverse vaccinology for the development of chimeric vaccine against Acinetobacter baumannii. Sci Rep. 2018;8(1):9044.
Article PubMed PubMed Central Google Scholar
Gupta S, et al. In silico approach for predicting toxicity of peptides and proteins. PloS one. 2013;8(9):e73957.
Article CAS PubMed PubMed Central Google Scholar
Jalal K, Khan K, Uddin R. Immunoinformatic-guided designing of multi-epitope vaccine construct against Brucella Suis 1300. Immunol Res. 2023;71(2):247–66. https://doi.org/10.1007/s12026-022-09346-0.
Hohman LS, Peters NC. CD4+ T cell-mediated immunity against the phagosomal pathogen Leishmania: Implications for vaccination. Trends Parasitol. 2019;35(6):423–35.
Article CAS PubMed Google Scholar
Uddin R, Jalal K, Khan K. Re-purposing of hepatitis C virus FDA approved direct acting antivirals as potential SARS-CoV-2 protease inhibitors. J Mol Struct. 2022;1250:131920.
Article CAS PubMed Google Scholar
Pethe K, et al. The heparin-binding haemagglutinin of M. tuberculosis is required for extrapulmonary dissemination. Nat Methods. 2001;412(6843):190–4.
Yang Y, et al. In silico design of a DNA-based HIV-1 multi-epitope vaccine for Chinese populations. Hum Vaccin Immunother. 2015;11(3):795–805.
Article PubMed PubMed Central Google Scholar
Ghaffari-Nazari H, et al. Improving multi-epitope long peptide vaccine potency by using a strategy that enhances CD4+ T help in BALB/c mice. PloS one. 2015;10(11):e0142563.
Article PubMed PubMed Central Google Scholar
Jalal K, et al. Pan-genome reverse vaccinology approach for the design of multi-epitope vaccine construct against Escherichia albertii. Int J Mol Sci. 2021;22(23):12814.
Article CAS PubMed PubMed Central Google Scholar
Wilkins MR, Gasteiger E, Bairoch A, Sanchez JC, Williams KL, Appel RD, Hochstrasser DF. Protein identification and analysis tools in the ExPASy server. Methods Mol Biol. 1999;112:531–52. https://doi.org/10.1385/1-59259-584-7:531.
Yang J, et al. The I-TASSER Suite: protein structure and function prediction. Nat Methods. 2015;12(1):7–8.
Article CAS PubMed PubMed Central Google Scholar
Wiederstein M, Sippl MJ. ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res. 2007;35(suppl_2):W407–10.
Article PubMed PubMed Central Google Scholar
Buchan DW, Jones DT. The PSIPRED protein analysis workbench: 20 years on. Nucleic Acids Res. 2019;47(W1):W402–7.
Article CAS PubMed PubMed Central Google Scholar
Laskowski RA, et al. PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Cryst. 1993;26(2):283–91.
Jalal K, Khan K, Basharat Z, Abbas MN, Uddin R, Ali F, Khan SA, Hassan SSU. Reverse vaccinology approach for multi-epitope centered vaccine design against delta variant of the SARS-CoV-2. Environ Sci Pollut Res Int. 2022;29(40):60035–53. https://doi.org/10.1007/s11356-022-19979-1.
Schneidman-Duhovny D, et al. PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res. 2005;33(suppl_2):W363–7.
Article CAS PubMed PubMed Central Google Scholar
March C, et al. Dissection of host cell signal transduction during Acinetobacter baumannii–triggered inflammatory response. PloS one. 2010;5(4):e10033.
Article PubMed PubMed Central Google Scholar
Weng G, et al. HawkDock: a web server to predict and analyze the protein–protein complex based on computational docking and MM/GBSA. Nucleic Acids Res. 2019;47(W1):W322–30.
Article CAS PubMed PubMed Central Google Scholar
Pettersen EF, et al. UCSF Chimera—a visualization system for exploratory research and analysis. J Comput Chem. 2004;25(13):1605–12.
Article CAS PubMed Google Scholar
Laskowski RA. PDBsum: summaries and analyses of PDB structures. Nucleic Acids Res. 2001;29(1):221–2.
Article CAS PubMed PubMed Central Google Scholar
Abraham MJ, et al. GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers. SoftwareX. 2015;1:19–25.
Tahir ul Qamar, M., et al., Reverse vaccinology assisted designing of multiepitope-based subunit vaccine against SARS-CoV-2. Infect Dis Poverty., 2020. 9(1). 1-14.
Grote A, et al. JCat: a novel tool to adapt codon usage of a target gene to its potential expression host. Nucleic Acids Res. 2005;33(suppl_2):W526–31.
Article CAS PubMed PubMed Central Google Scholar
Stanaway JD, et al. The global burden of dengue: an analysis from the Global Burden of Disease Study 2013. Lancet Infect Dis. 2016;16(6):712–23.
Article PubMed PubMed Central Google Scholar
Messina JP, et al. The current and future global distribution and population at risk of dengue. Nat Microbiol. 2019;4(9):1508–15.
留言 (0)