Dalal SR, Chang EB. The microbial basis of inflammatory bowel diseases. J Clin Invest. 2014;124(10):4190–6.
Article PubMed PubMed Central Google Scholar
Kobayashi T, Siegmund B, Le Berre C, Wei SC, Ferrante M, Shen B, et al. Ulcerative colitis. Nat Reviews Disease Primers. 2020;6(1):74.
Ungaro R, Mehandru S, Allen PB, Peyrin-Biroulet L, Colombel JF. Ulcerative colitis. Lancet. 2017;389(10080):1756–70.
Athanasakos A, Mazioti A, Economopoulos N, Kontopoulou C, Stathis G, Filippiadis D, et al. Inflammatory bowel disease—the role of cross-sectional imaging techniques in the investigation of the small bowel. Insights into Imaging. 2015;6(1):73–83.
Weiser M, Simon JM, Kochar B, Tovar A, Israel JW, Robinson A, et al. Molecular classification of Crohn’s disease reveals two clinically relevant subtypes. Gut. 2018;67(1):36–42.
Article CAS PubMed Google Scholar
Ahluwalia B, Moraes L, Magnusson MK, Öhman L. Immunopathogenesis of inflammatory bowel disease and mechanisms of biological therapies. Scand J Gastroenterol. 2018;53(4):379–89.
Khorsand B, Asadzadeh Aghdaei H, Nazemalhosseini-Mojarad E, Nadalian B, Nadalian B, Houri H. Overrepresentation of Enterobacteriaceae and Escherichia coli is the major gut microbiome signature in Crohn’s disease and ulcerative colitis; a comprehensive metagenomic analysis of IBDMDB datasets. Front Cell Infect Microbiol. 2022;12.
Sekirov I, Tam NM, Jogova M, Robertson ML, Li Y, Lupp C, et al. Antibiotic-induced perturbations of the intestinal microbiota alter host susceptibility to enteric infection. Infect Immun. 2008;76(10):4726–36.
Article CAS PubMed PubMed Central Google Scholar
Castanheira M, Simner PJ, Bradford PA. Extended-spectrum β-lactamases: an update on their characteristics, epidemiology and detection. JAC-Antimicrobial Resist. 2021;3(3).
Gutiérrez-Gutiérrez B, Rodríguez-Baño J. Current options for the treatment of infections due to extended-spectrum beta-lactamase-producing Enterobacteriaceae in different groups of patients. Clin Microbiol Infect. 2019;25(8):932–42.
Vaisman A, Pivovarov K, McGeer A, Willey B, Borgundvaag B, Porter V, et al. Prevalence and incidence of antimicrobial-resistant organisms among hospitalized inflammatory bowel disease patients. Can J Infect Dis Med Microbiol. 2013;24(4):e117–21.
Article PubMed PubMed Central Google Scholar
Ananthakrishnan AN, McGinley EL. Infection-related hospitalizations are associated with increased mortality in patients with inflammatory bowel diseases. J Crohns Colitis. 2013;7(2):107–12.
Magro F, Langner C, Driessen A, Ensari A, Geboes K, Mantzaris GJ, et al. European consensus on the histopathology of inflammatory bowel disease. J Crohns Colitis. 2013;7(10):827–51.
Article CAS PubMed Google Scholar
Li P, Zhang D, Li H, Pang J, Guo H, Qiu J. Establishment and application of Multiplex PCR for simultaneously detecting Escherichia coli, Salmonella, Klebsiella pneumoniae, and Staphylococcus aureus in Minks. Front Vet Sci. 2020;7:588173.
Article PubMed PubMed Central Google Scholar
Clinical and Laboratory Standards Institute (CLSI). Performance Standards for Antimicrobial Susceptibility Testing. 30 ed2021.
Nordmann P, Poirel L, Dortet L. Rapid detection of carbapenemase-producing Enterobacteriaceae. Emerg Infect Dis. 2012;18(9):1503–7.
Article PubMed PubMed Central Google Scholar
Pasteran F, Tijet N, Melano RG, Corso A. Simplified protocol for Carba NP Test for enhanced detection of Carbapenemase Producers directly from bacterial cultures. J Clin Microbiol. 2015;53(12):3908–11.
Article CAS PubMed PubMed Central Google Scholar
Dallenne C, Da Costa A, Decré D, Favier C, Arlet G. Development of a set of multiplex PCR assays for the detection of genes encoding important β-lactamases in Enterobacteriaceae. J Antimicrob Chemother. 2010;65(3):490–5.
Article CAS PubMed Google Scholar
Trung NT, Hien TT, Huyen TT, Quyen DT, Binh MT, Hoan PQ, et al. Simple multiplex PCR assays to detect common pathogens and associated genes encoding for acquired extended spectrum betalactamases (ESBL) or carbapenemases from surgical site specimens in Vietnam. Ann Clin Microbiol Antimicrob. 2015;14:23.
Article PubMed PubMed Central Google Scholar
Olbjørn C, Cvancarova Småstuen M, Thiis-Evensen E, Nakstad B, Vatn MH, Jahnsen J, et al. Fecal microbiota profiles in treatment-naïve pediatric inflammatory bowel disease - associations with disease phenotype, treatment, and outcome. Clin Exp Gastroenterol. 2019;12:37–49.
Article PubMed PubMed Central Google Scholar
Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, et al. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biol. 2012;13(9):R79.
Article CAS PubMed PubMed Central Google Scholar
Mukhopadhya I, Hansen R, El-Omar EM, Hold GL. IBD-what role do Proteobacteria play? Nat Rev Gastroenterol Hepatol. 2012;9(4):219–30.
Article CAS PubMed Google Scholar
Piewngam P, Quiñones M, Thirakittiwatthana W, Yungyuen T, Otto M, Kiratisin P. Composition of the intestinal microbiota in extended-spectrum β-lactamase-producing Enterobacteriaceae carriers and non-carriers in Thailand. Int J Antimicrob Agents. 2019;53(4):435–41.
Article CAS PubMed Google Scholar
Beigverdi R, Jabalameli L, Jabalameli F, Emaneini M. Prevalence of extended-spectrum β-lactamase-producing Klebsiella pneumoniae: first systematic review and meta-analysis from Iran. J Global Antimicrob Resist. 2019;18:12–21.
Aghamohammad S, Nikbin VS, Badmasti F, Shahcheraghi F. High heterogeneity of fecal carriage extended-spectrum beta-lactamase-producing E. coli isolated from iranian community and clinical settings. BMC Infect Dis. 2022;22(1):318.
Article CAS PubMed PubMed Central Google Scholar
Skuja V, Derovs A, Pekarska K, Rudzite D, Lavrinovica E, Piekuse L, et al. Gut colonization with extended-spectrum β-lactamase-producing Enterobacteriaceae may increase disease activity in biologic-naive outpatients with ulcerative colitis: an interim analysis. Eur J Gastroenterol Hepatol. 2018;30(1):92–100.
Article CAS PubMed Google Scholar
Leung W, Malhi G, Willey BM, McGeer AJ, Borgundvaag B, Thanabalan R, et al. Prevalence and predictors of MRSA, ESBL, and VRE colonization in the ambulatory IBD population. J Crohns Colitis. 2012;6(7):743–9.
Roberts LW, Hoi LT, Khokhar FA, Hoa NT, Giang TV, Bui C, et al. Genomic characterisation of multidrug-resistant < em > Escherichia coli, Klebsiella pneumoniae, and < em > Acinetobacter baumannii in two intensive care units in Hanoi, Viet Nam: a prospective observational cohort study. The Lancet Microbe. 2022;3(11):e857–e66.
Article CAS PubMed Google Scholar
Ibrahim DR, Dodd CER, Stekel DJ, Meshioye RT, Diggle M, Lister M et al. Multidrug-resistant ESBL-Producing E. coli in Clinical samples from the UK. Antibiot (Basel). 2023;12(1).
Gruszecka J, Filip R. Are hospitalized patients with inflammatory bowel disease at increased risk of invasive bacterial infections? Results from POLIBD 3-year cohort study. Gut Pathog. 2021;13(1):12.
Article CAS PubMed PubMed Central Google Scholar
Joseph L, Merciecca T, Forestier C, Balestrino D, Miquel S. From Klebsiella pneumoniae colonization to dissemination: an overview of studies implementing murine models. Microorganisms. 2021;9(6):1282.
Article PubMed PubMed Central Google Scholar
Thänert R, Thänert A, Ou J, Bajinting A, Burnham C-AD, Engelstad HJ, et al. Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections. Gut Microbes. 2021;13(1):1940792.
Article PubMed PubMed Central Google Scholar
Tamma PD, Aitken SL, Bonomo RA, Mathers AJ, van Duin D, Clancy C. Infectious diseases society of america antimicrobial resistant treatment guidance: gram-negative bacterial infections. Practice. 2020;6(8).
Doi Y. Treatment Options for Carbapenem-resistant Gram-negative bacterial infections. Clin Infect Dis. 2019;69(Supplement7):565–S75.
Yuan W, Xu J, Guo L, Chen Y, Gu J, Zhang H, et al. Clinical risk factors and microbiological and intestinal characteristics of carbapenemase-producing < i > Enterobacteriaceae colonization and subsequent infection. Microbiol Spectr. 2022;10(6):e01906–21.
Article PubMed PubMed Central Google Scholar
Garrett WS, Gallini CA, Yatsunenko T, Michaud M, DuBois A, Delaney ML, et al. Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis. Cell Host Microbe. 2010;8(3):292–300.
Article CAS PubMed PubMed Central Google Scholar
Chandra H, Sharma KK, Tuovinen OH, Sun X, Shukla P. Pathobionts: mechanisms of survival, expansion, and interaction with host with a focus on Clostridioides difficile. Gut Microbes. 2021;13(1):1979882.
Article PubMed PubMed Central Google Scholar
Paterson DL, Bonomo RA. Extended-spectrum beta-lactamases: a clinical update. Clin Microbiol Rev. 2005;18(4):657–86.
Article CAS PubMed PubMed Central Google Scholar
Tolun V, Küçükbasmaci Ö, Törümküney-Akbulut D, Çatal Ç, Anğ-Küçüker M, Auğ Ö. Relationship between ciprofloxacin resistance and extended-spectrum β-lactamase production in Escherichia coli and Klebsiella pneumoniae strains. Clin Microbiol Infect. 2004;10(1):72–5.
Comments (0)