Ahmadi N., Audebert A., Bennett M. J., Bishopp A., de Oliveira A. C., Courtois B. et al. 2014 The roots of future rice harvests. Rice 7, 1–9.
Alexander D. H., Novembre J. and Lange K. 2009 Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655–1664.
Article CAS PubMed PubMed Central Google Scholar
Belanger E., Lucotte M., Gregoire B., Moingt M., Paquet S., Davidson R. et al. 2015 Lignin signatures of vegetation and soils in tropical environments. Adv. Environ. Res. 4, 247–262.
Benjamini Y. and Hochberg Y. 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B Stat. Methodol. 57, 289–300.
Bomba L., Nicolazzi E. L., Milanesi M., Negrini R., Mancini G., Biscarini F. et al. 2015 Relative extended haplotype homozygosity signals across breeds reveal dairy and beef specific signatures of selection. Genet. Sel. 47, 1–14.
Browning B. L., Zhou Y. and Browning S. R. 2018 A one-penny imputed genome from next-generation reference panels. Am. J. Hum. Genet. 103, 338–348.
Article CAS PubMed PubMed Central Google Scholar
Chen X., Shang J., Chen D., Lei C., Zou Y., Zhai W. et al. 2006 AB-lectin receptor kinase gene conferring rice blast resistance. Plant J. 46, 794–804.
Article CAS PubMed Google Scholar
Chiniquy D., Varanasi P., Oh T., Harholt J., Katnelson J., Singh S. et al. 2013 Three novel rice genes closely related to the Arabidopsis IRX9, IRX9L, and IRX14 genes and their roles in xylan biosynthesis. Front. Plant Sci. 4, 83.
Article PubMed PubMed Central Google Scholar
Chu G., Chen T., Wang Z., Yang J. and Zhang J. 2014 Reprint of Morphological and physiological traits of roots and their relationships with water productivity in water-saving and drought-resistant rice. Field Crops Res. 165, 36–48.
Cook D. E. and Andersen E. C. 2017 VCF-kit: assorted utilities for the variant call format. Bioinformatics 33, 1581–1582.
Article CAS PubMed PubMed Central Google Scholar
Cosgrove D. J. 2005 Growth of the plant cell wall. Nat. Rev. Mol. Cell Biol. 6, 850–861.
Article CAS PubMed Google Scholar
Danecek P., Auton A., Abecasis G., Albers C. A., Banks E., DePristo M. A. et al. 2011 The variant call format and VCFtools. Bioinformatics 27, 2156–2158.
Article CAS PubMed PubMed Central Google Scholar
Decker J. E., McKay S. D., Rolf M. M., Kim J., Molina A. A., Sonstegard T. S. et al. 2014 Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle. PLoS Genet. 10, e1004254.
Article PubMed PubMed Central Google Scholar
Dong N.-Q., Sun Y., Guo T., Shi C.-L., Zhang Y.-M., Kan Y. et al. 2020 UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice. Nat. Commun. 11, 1–16.
Durinck S., Spellman P. T., Birney E. and Huber W. 2009 Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt. Nat. Protoc. 4, 1184–1191.
Article CAS PubMed PubMed Central Google Scholar
Fageria N., Slaton N. and Baligar V. 2003 Nutrient management for improving lowland rice productivity and sustainability. Adv. Agron. 80, 63–152.
Feuk L., Carson A. R. and Scherer S. W. 2006 Structural variation in the human genome. Nat. Rev. Genet. 7, 85–97.
Article CAS PubMed Google Scholar
Fukuda M., Soma D. M., Iwasaki S., Nakamura S., Kanda T., Ouattara K. and Nagumo F. 2021 Site-specific responses of lowland rice to acidulated and calcined phosphate rock fertilizers in the Center-West region of Burkina Faso. PLoS One 16, e0250240.
Article CAS PubMed PubMed Central Google Scholar
Fuller D. Q., Sato Y.-I., Castillo C., Qin L., Weisskopf A. R., Kingwell-Banham E. J. et al. 2010 Consilience of genetics and archaeobotany in the entangled history of rice. Archaeol. Anthropol. Sci. 2, 115–131.
Gamuyao R., Chin J. H., Pariasca-Tanaka J., Pesaresi P., Catausan S., Dalid C. et al. 2012 The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency. Nature 488, 535–539.
Article CAS PubMed Google Scholar
Grossman S. R., Shylakhter I., Karlsson E. K., Byrne E. H., Morales S., Frieden G. et al. 2010 A composite of multiple signals distinguishes causal variants in regions of positive selection. Science 327, 883–886.
Article CAS PubMed Google Scholar
He Z., Zou T., Xiao Q., Yuan G., Liu M., Tao Y. et al. 2021 An L-type lectin receptor-like kinase promotes starch accumulation during rice pollen maturation. Development 148, dev196378.
Article CAS PubMed Google Scholar
Hill W. and Robertson A. 1968 Linkage disequilibrium in finite populations. Theor. Appl. Genet. 38, 226–231.
Article CAS PubMed Google Scholar
Huang L., Wang W., Zhang N., Cai Y., Liang Y., Meng X. et al. 2021 LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells. New Phytol. 231, 1073–1087.
Article CAS PubMed Google Scholar
Huang X., Kurata N., Wang Z.-X., Wang A., Zhao Q., Zhao Y. et al. 2012 A map of rice genome variation reveals the origin of cultivated rice. Nature 490, 497–501.
Article CAS PubMed PubMed Central Google Scholar
Islam T., Manna M., Kaul T., Pandey S., Reddy C. S. and Reddy M. 2015 Genome-wide dissection of Arabidopsis and rice for the identification and expression analysis of glutathione peroxidases reveals their stress-specific and overlapping response patterns. Plant Mol. Biol. Rep. 33, 1413–1427.
Jensen J. D., Kim Y., DuMont V. B., Aquadro C. F. and Bustamante C. D. 2005 Distinguishing between selective sweeps and demography using DNA polymorphism data. Genetics 170, 1401–1410.
Article CAS PubMed PubMed Central Google Scholar
Jing Q., Spiertz J., Hengsdijk H., Van Keulen H., Cao W. and Dai T. 2010 Adaptation and performance of rice genotypes in tropical and subtropical environments. NJAS-Wagen. J. Life Sci. 57, 149–157.
Joshi T., Pandey S. C., Maiti P., Tripathi M., Paliwal A., Nand M. et al. 2021 Antimicrobial activity of methanolic extracts of Vernonia cinerea against Xanthomonas oryzae and identification of their compounds using in silico techniques. Plos One 16, e0252759.
Article CAS PubMed PubMed Central Google Scholar
Ju C., Buresh R. J., Wang Z., Zhang H., Liu L., Yang J. and Zhang J. 2015 Root and shoot traits for rice varieties with higher grain yield and higher nitrogen use efficiency at lower nitrogen rates application. Field Crops Res. 175, 47–55.
Kim I. A., Kim B.-G., Kim M. and Ahn J.-H. 2012 Characterization of hydroxycinnamoyltransferase from rice and its application for biological synthesis of hydroxycinnamoyl glycerols. Phytochemistry 76, 25–31.
Article CAS PubMed Google Scholar
Kiple K. F., Ornelas K. 2000 The Cambridge world history of food. Cambridge University Press.
Kiryu M., Hamanaka M., Yoshitomi K., Mochizuki S., Akimitsu K. and Gomi K. 2018 Rice terpene synthase 18 (OsTPS18) encodes a sesquiterpene synthase that produces an antibacterial (E)-nerolidol against a bacterial pathogen of rice. J. Genet. Plant Pathol. 84, 221–229.
Koiwa H., Li F., McCully M. G., Mendoza I., Koizumi N., Manabe Y. et al. 2003 The STT3a subunit isoform of the Arabidopsis oligosaccharyltransferase controls adaptive responses to salt/osmotic stress. Plant Cell 15, 2273–2284.
Article CAS PubMed PubMed Central Google Scholar
Kondo M., Aguilar A., Abe J. and Morita S. 2000 Anatomy of nodal roots in tropical upland and lowland rice varieties. Plant Prod. Sci. 3(4), 437–445.
Kushwaha H. R., Joshi R., Pareek A. and Singla-Pareek S. L. 2016 MATH-domain family shows response toward abiotic stress in Arabidopsis and rice. Front. Plant Sci. 7, 923.
Article PubMed PubMed Central Google Scholar
La Camera S., Gouzerh G., Dhondt S., Hoffmann L., Fritig B., Legrand M. and Heitz T. 2004 Metabolic reprogramming in plant innate immunity: the contributions of phenylpropanoid and oxylipin pathways. Immunol. Rev. 198, 267–284.
Lavarenne J., Gonin M., Champion A., Javelle M., Adam H., Rouster J. et al. 2020 Transcriptome profiling of laser-captured crown root primordia reveals new pathways activated during early stages of crown root formation in rice. PLoS One 15, e0238736.
Article CAS PubMed PubMed Central Google Scholar
Lee G. W., Lee S., Chung M.-S., Jeong Y. S. and Chung B. Y. 2015 Rice terpene synthase 20 (OsTPS20) plays an important role in producing terpene volatiles in response to abiotic stresses. Protoplasma 252, 997–1007.
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