Global dynamics behind enzyme catalysis, evolution, and design

Enzymes are inherently dynamic systems, with their catalytic efficiency closely tied to coordinated internal motions that support function. This understanding has shifted the classical view of enzymes from static, structure-based models to dynamic frameworks, where fluctuations support substrate binding, catalysis, and product release [1, 2, 3, 4]. This broadened view complements established concepts such as active-site complementarity and electrostatic preorganization, offering a more integrated understanding of enzyme mechanisms—one that captures both structural precision and the functional role of dynamics [5].

Catalytic activity arises from a hierarchy of motions - from fast local fluctuations to slow, large-scale domain shifts governed by the enzyme's architecture and modulated by the cellular environment. These motions unfold along conformational and chemical energy landscapes and must be precisely coordinated across structural and dynamic states throughout the reaction pathway [6, 7, ∗8, 9]. Such fluctuations are not random; they reflect organized patterns of residue-level displacements and global collective movements that steer the enzyme through functionally distinct conformations, constrained by evolutionary and topological principles.

Collective motions trace specific, low-energy pathways through complex, multidimensional landscapes - often coupled to key chemical events [9] (Figure 1). Allosteric interactions, ranging from classic ligand-induced conformational changes to more nuanced forms of dynamic allostery, either emerge from or direct these excursions, modulating signal propagation and reshaping the conformational ensemble to optimize catalysis. [10, 11, 12, 13, 14]. Together, these dynamic features define distinct, evolutionarily tuned signatures for catalyzing specific or multi-step reactions. While evolution preserves core mechanistic strategies, it also leverages conformational dynamics as a means for functional innovation [11,15].

This mini-review highlights recent insights and future directions on how global collective dynamics and allosteric regulation intersect to drive enzyme function and evolution - principles that also inform enzyme design and allosteric engineering.

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