Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37:W202–208
Article CAS PubMed PubMed Central Google Scholar
Chaikam V, Karlson D (2008) Functional characterization of two cold shock domain proteins from Oryza sativa. Plant Cell Environ 31:995–1006
Article CAS PubMed Google Scholar
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31:3497–3500
Article CAS PubMed PubMed Central Google Scholar
Choi MJ, Park YR, Park SJ, Kang H (2015) Stress-responsive expression patterns and functional characterization of cold shock domain proteins in cabbage (Brassica rapa) under abiotic stress conditions. Plant Physiol Biochem 96:132–140
Article CAS PubMed Google Scholar
Chou KC, Shen HB (2008) Cell-PLoc: a package of web servers for predicting subcellular localization of proteins in various organisms. Nat Protoc 3:153–162
Article CAS PubMed Google Scholar
Esti M, Cinquanta L, Sinesio F, Moneta E, Di Matteo M (2002) Physicochemical and sensory fruit characteristics of two sweet cherry cultivars after cool storage. Food Chem 76:399–405
Gao H, Yu C, Liu R, Li X, Huang H, Wang X, Zhang C, Jiang N, Li X, Cheng S et al (2022) The glutathione S-Transferase PtGSTF1 improves Biomass Production and Salt Tolerance through regulating Xylem Cell Proliferation, Ion Homeostasis and reactive oxygen species scavenging in Poplar. Int J Mol Sci 23
Graumann PL, Marahiel MA (1998) A superfamily of proteins that contain the cold-shock domain. Trends Biochem Sci 23:286–290
Article CAS PubMed Google Scholar
Huang F, Tang J, Hou X (2016) Molecular cloning and characterization of BcCSP1, a pak-choi (Brassica rapa ssp. chinensis) cold shock protein gene highly co-expressed under ABA and cold stimulation. Acta Physiol Plant 38:47
Huang F, Wang J, Tang J, Hou X (2019) Identification, evolution and functional inference on the cold-shock domain protein family in pak-choi (Brassica rapa ssp. chinensis) and Chinese cabbage (Brassica rapa ssp. pekinensis). J Plant Interact 14:232–241
Huang F, Wang J, Duan W, Hou X (2020) Identification and Expression Analysis of Cold Shock Protein 3 (BcCSP3) in Non-Heading Chinese Cabbage (Brassica rapa ssp. chinensis). Plants (Basel) 9
Karlson D, Imai R (2003) Conservation of the cold shock domain protein family in plants. Plant Physiol 131:12–15
Article CAS PubMed PubMed Central Google Scholar
Karlson D, Nakaminami K, Toyomasu T, Imai R (2002) A cold-regulated nucleic acid-binding protein of winter wheat shares a domain with bacterial cold shock proteins. J Biol Chem 277:35248–35256
Article CAS PubMed Google Scholar
Kim JS, Park SJ, Kwak KJ, Kim YO, Kim JY, Song J, Jang B, Jung CH, Kang H (2007) Cold shock domain proteins and glycine-rich RNA-binding proteins from Arabidopsis thaliana can promote the cold adaptation process in Escherichia coli. Nucleic Acids Res 35:506–516
Article CAS PubMed Google Scholar
Kim JS, Jung HJ, Lee HJ, Kim KA, Goh CH, Woo Y, Oh SH, Han YS, Kang H (2008) Glycine-rich RNA-binding protein 7 affects abiotic stress responses by regulating stomata opening and closing in Arabidopsis thaliana. Plant J 55:455–466
Article CAS PubMed Google Scholar
Kim MH, Sasaki K, Imai R (2009) Cold shock domain protein 3 regulates freezing tolerance in Arabidopsis thaliana. J Biol Chem 284:23454–23460
Article CAS PubMed PubMed Central Google Scholar
Kim MH, Sato S, Sasaki K, Saburi W, Matsui H, Imai R (2013) COLD SHOCK DOMAIN PROTEIN 3 is involved in salt and drought stress tolerance in Arabidopsis. FEBS Open Bio 3:438–442
Article CAS PubMed PubMed Central Google Scholar
Kim SY, Kim JS, Cho W, Jun KM, Du X, Kim KD, Kim YK, Lee GS (2021) A Cold-shock protein from the South Pole-Dwelling Soil Bacterium Arthrobacter Sp. Confers Cold Tolerance to Rice. Genes (Basel) 12
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19:1639–1645
Article CAS PubMed PubMed Central Google Scholar
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30:325–327
Article CAS PubMed PubMed Central Google Scholar
Li C, Hou N, Fang N, He J, Ma Z, Ma F, Guan Q, Li X (2021) Cold shock protein 3 plays a negative role in apple drought tolerance by regulating oxidative stress response. Plant Physiol Biochem 168:83–92
Article CAS PubMed Google Scholar
Martin K, Kopperud K, Chakrabarty R, Banerjee R, Brooks R, Goodin MM (2009) Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta. Plant J 59:150–162
Article CAS PubMed Google Scholar
Nakaminami K, Sasaki K, Kajita S, Takeda H, Karlson D, Ohgi K, Imai R (2005) Heat stable ssDNA/RNA-binding activity of a wheat cold shock domain protein. FEBS Lett 579:4887–4891
Article CAS PubMed Google Scholar
Nakaminami K, Karlson DT, Imai R (2006) Functional conservation of cold shock domains in bacteria and higher plants. Proc Natl Acad Sci U S A 103:10122–10127
Article CAS PubMed PubMed Central Google Scholar
Otasek D, Morris JH, Bouças J, Pico AR, Demchak B (2019) Cytoscape automation: empowering workflow-based network analysis. Genome Biol 20:185
Article PubMed PubMed Central Google Scholar
Park SJ, Kwak KJ, Oh TR, Kim YO, Kang H (2009) Cold shock domain proteins affect seed germination and growth of Arabidopsis thaliana under abiotic stress conditions. Plant Cell Physiol 50:869–878
Article CAS PubMed Google Scholar
Peterson GI, Masel J (2009) Quantitative prediction of molecular clock and ka/ks at short timescales. Mol Biol Evol 26:2595–2603
Article CAS PubMed PubMed Central Google Scholar
Radkova M, Vítámvás P, Sasaki K, Imai R (2014) Development- and cold-regulated accumulation of cold shock domain proteins in wheat. Plant Physiol Biochem 77:44–48
Article CAS PubMed Google Scholar
Sasaki K, Imai R (2011) Pleiotropic roles of cold shock domain proteins in plants. Front Plant Sci 2:116
Sasaki K, Kim MH, Imai R (2007) Arabidopsis COLD SHOCK DOMAIN PROTEIN2 is a RNA chaperone that is regulated by cold and developmental signals. Biochem Biophys Res Commun 364:633–638
Article CAS PubMed Google Scholar
Sasaki K, Kim MH, Imai R (2013) Arabidopsis COLD SHOCK DOMAIN PROTEIN 2 is a negative regulator of cold acclimation. New Phytol 198:95–102
Article CAS PubMed Google Scholar
Sasaki K, Kim M-H, Kanno Y, Seo M, Kamiya Y, Imai R (2015a) Arabidopsis COLD SHOCK DOMAIN PROTEIN 2 influences ABA accumulation in seed and negatively regulates germination. Biochem Biophys Res Commun 456:380–384
Article CAS PubMed Google Scholar
Sasaki K, Liu Y, Kim MH, Imai R (2015b) An RNA chaperone, AtCSP2, negatively regulates salt stress tolerance. Plant Signal Behav 10:e1042637
Comments (0)