Genetic Discrimination of Grade 3 and Grade 4 Gliomas by Artificial Neural Network

Bärlund M, Monni O, Weaver JD, Kauraniemi P, Sauter G, Heiskanen M, Kallioniemi O-P, Kallioniemi A (2002) Cloning of BCAS3 (17q23) and BCAS4 (20q13) genes that undergo amplification, overexpression, and fusion in breast cancer. Genes Chromosom Cancer 35:311–317. https://doi.org/10.1002/gcc.10121

Article  CAS  PubMed  Google Scholar 

Chever O, Djukic B, McCarthy KD, Amzica F (2010) Implication of Kir4.1 channel in excess potassium clearance: an in vivo study on anesthetized glial-conditional Kir4.1 knock-out mice. J Neurosci 30:15769–15777. https://doi.org/10.1523/JNEUROSCI.2078-10.2010

Article  CAS  PubMed  PubMed Central  Google Scholar 

Childs KS (2003) Identification of novel co-repressor molecules for Interferon Regulatory Factor-2. Nucleic Acids Res 31:3016–3026. https://doi.org/10.1093/nar/gkg431

Article  CAS  PubMed  PubMed Central  Google Scholar 

Choi JK, Yu U, Yoo OJ, Kim S (2005) Differential coexpression analysis using microarray data and its application to human cancer. Bioinformatics 21:4348–4355. https://doi.org/10.1093/bioinformatics/bti722

Article  CAS  PubMed  Google Scholar 

Christians A, Adel-Horowski A, Banan R, Lehmann U, Bartels S, Behling F, Barrantes-Freer A, Stadelmann C, Rohde V, Stockhammer F, Hartmann C (2019) The prognostic role of IDH mutations in homogeneously treated patients with anaplastic astrocytomas and glioblastomas. Acta Neuropathol Commun. https://doi.org/10.1186/s40478-019-0817-0

Article  PubMed  PubMed Central  Google Scholar 

Cuddapah VA, Robel S, Watkins S, Sontheimer H (2014) A neurocentric perspective on glioma invasion. Nat Rev Neurosci 15:455–465. https://doi.org/10.1038/nrn3765

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dmitrenko VV, Iershov AV, Stetsyuk PI, Lykhovid AP, Laptin YP, Schwartz DR, Mekler AA, Kavsan VM (2014) Determination of molecular glioblastoma subclasses on the basis of analysis of gene expression. Cytol Genet 48:383–391. https://doi.org/10.3103/S0095452714060036

Article  Google Scholar 

Franceschi S, Corsinovi D, Lessi F, Tantillo E, Aretini P, Menicagli M, Scopelliti C, Civita P, Pasqualetti F, Naccarato AG, Ori M, Mazzanti CM (2018) Mitochondrial enzyme GLUD2 plays a critical role in glioblastoma progression. EBioMedicine 37:56–67. https://doi.org/10.1016/j.ebiom.2018.10.008

Article  PubMed  PubMed Central  Google Scholar 

Freije WA, Castro-Vargas FE, Fang Z, Horvath S, Cloughesy T, Liau LM, Mischel PS, Nelson SF (2004) Gene expression profiling of gliomas strongly predicts survival. Can Res 64:6503–6510. https://doi.org/10.1158/0008-5472.CAN-04-0452

Article  CAS  Google Scholar 

Furnari FB, Fenton T, Bachoo RM, Mukasa A, Stommel JM, Stegh A, Hahn WC, Ligon KL, Louis DN, Brennan C, Chin L, DePinho RA, Cavenee WK (2007) Malignant astrocytic glioma: genetics, biology, and paths to treatment. Genes Dev 21:2683–2710. https://doi.org/10.1101/gad.1596707

Article  CAS  PubMed  Google Scholar 

González-García N, Nieto-Librero AB, Vital AL, Tao HJ, González-Tablas M, Otero Á, Galindo-Villardón P, Orfao A, Tabernero MD (2020) Multivariate analysis reveals differentially expressed genes among distinct subtypes of diffuse astrocytic gliomas: diagnostic implications. Sci Rep. https://doi.org/10.1038/s41598-020-67743-7

Article  PubMed  PubMed Central  Google Scholar 

Hainzl T, Huang S, Sauer-Eriksson AE (2002) Structure of the SRP19–RNA complex and implications for signal recognition particle assembly. Nature 417:767–771. https://doi.org/10.1038/nature00768

Article  CAS  PubMed  Google Scholar 

Hartmann C, Meyer J, Balss J, Capper D, Mueller W, Christians A, Felsberg J, Wolter M, Mawrin C, Wick W, Weller M, Herold-Mende C, Unterberg A, Jeuken JWM, Wesseling P, Reifenberger G, von Deimling A (2009) Type and frequency of IDH1 and IDH2 mutations are related to astrocytic and oligodendroglial differentiation and age: a study of 1,010 diffuse gliomas. Acta Neuropathol 118:469–474. https://doi.org/10.1007/s00401-009-0561-9

Article  PubMed  Google Scholar 

Hung L-H, Heiner M, Hui J, Schreiner S, Benes V, Bindereif A (2007) Diverse roles of hnRNP L in mammalian mRNA processing: a combined microarray and RNAi analysis. RNA 14:284–296. https://doi.org/10.1261/rna.725208

Article  CAS  PubMed  Google Scholar 

Kim S, Dougherty ER, Shmulevich I, Hess KR, Hamilton SR, Trent JM, Fuller GN, Zhang W (2002) Identification of combination gene sets for glioma classification. Mol Cancer Ther 1(13):1229–1236

CAS  PubMed  Google Scholar 

Korshunov A, Okonechnikov K, Stichel D, Schrimpf D, Delaidelli A, Tonn S, Mynarek M, Sievers P, Sahm F, Jones DTW, von Deimling A, Pfister SM, Kool M (2022) Gene expression profiling of Group 3 medulloblastomas defines a clinically tractable stratification based on KIRREL2 expression. Acta Neuropathol 144:339–352. https://doi.org/10.1007/s00401-022-02460-1

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu T, Papagiannakopoulos T, Puskar K, Qi S, Santiago F, Clay W, Lao K, Lee Y, Nelson SF, Kornblum HI, Doyle F, Petzold L, Shraiman B, Kosik KS (2007) Detection of a MicroRNA signal in an in vivo expression set of mRNAs. PloS one 2:e804. https://doi.org/10.1371/journal.pone.0000804

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu Z, Yao Z, Li C, Lu Y, Gao C (2011) Gene expression profiling in human high-grade astrocytomas. Comp Funct Genomics 2011:1–10. https://doi.org/10.1155/2011/245137

Article  CAS  Google Scholar 

Louis DN, Perry A, Wesseling P, Brat DJ, Cree IA, Figarella-Branger D, Hawkins C, Ng HK, Pfister SM, Reifenberger G, Soffietti R, von Deimling A, Ellison DW (2021) The 2021 WHO classification of tumors of the central nervous system: a summary. Neuro Oncol 23:1231–1251. https://doi.org/10.1093/neuonc/noab106

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lu C-H, Wei S-T, Liu J-J, Chang Y-J, Lin Y-F, Yu C-S, Chang SL-Y (2022) Recognition of a Novel gene signature for human glioblastoma. Int J Mol Sci 23:4157. https://doi.org/10.3390/ijms23084157

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lyon RC, Johnston SM, Watson DG, McGarvie G, Ellis EM (2007) Synthesis and catabolism of γ-hydroxybutyrate in SH-SY5Y human neuroblastoma cells. J Biol Chem 282:25986–25992. https://doi.org/10.1074/jbc.M702465200

Article  CAS  PubMed  Google Scholar 

Mackay TFC (2013) Epistasis and quantitative traits: using model organisms to study gene–gene interactions. Nat Rev Genet 15:22–33. https://doi.org/10.1038/nrg3627

Article  CAS  PubMed  PubMed Central  Google Scholar 

Maus A, Peters GJ (2016) Glutamate and α-ketoglutarate: key players in glioma metabolism. Amino Acids 49:21–32. https://doi.org/10.1007/s00726-016-2342-9

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mekler A, Schwarz D (2014) Quality assessment of data discrimination using self-organizing maps. J Biomed Inform 51:210–218. https://doi.org/10.1016/j.jbi.2014.06.001

Article  PubMed  Google Scholar 

Mitchell M (1998) An introduction to genetic algorithms. MIT Press, Cambridge

Book  Google Scholar 

Nawaz FZ, Kipreos ET (2022) Emerging roles for folate receptor FOLR1 in signaling and cancer. Trends Endocrinol Metab 33:159–174. https://doi.org/10.1016/j.tem.2021.12.003

Article  CAS  PubMed  PubMed Central  Google Scholar 

Paniagua S, Cakir B, Hu Y, Kiral FR, Tanaka Y, Xiang Y, Patterson B, Gruen JR, Park I-H (2022) Dyslexia associated gene KIAA0319 regulates cell cycle during human neuroepithelial cell development. Front Cell Dev Biol. https://doi.org/10.3389/fcell.2022.967147

Article  PubMed  PubMed Central  Google Scholar 

Parker N, Turk MJ, Westrick E, Lewis JD, Low PS, Leamon CP (2005) Folate receptor expression in carcinomas and normal tissues determined by a quantitative radioligand binding assay. Anal Biochem 338:284–293. https://doi.org/10.1016/j.ab.2004.12.026

Article  CAS  PubMed  Google Scholar 

Petalidis LP, Oulas A, Backlund M, Wayland MT, Liu L, Plant K, Happerfield L, Freeman TC, Poirazi P, Collins VP (2008) Improved grading and survival prediction of human astrocytic brain tumors by artificial neural network analysis of gene expression microarray data. Mol Cancer Ther 7:1013–1024. https://doi.org/10.1158/1535-7163.MCT-07-0177

Article  CAS  PubMed  PubMed Central  Google Scholar 

Phillips HS, Kharbanda S, Chen R, Forrest WF, Soriano RH, Wu TD, Misra A, Nigro JM, Colman H, Soroceanu L, Williams PM, Modrusan Z, Feuerstein BG, Aldape K (2006) Molecular subclasses of high-grade glioma predict prognosis, delineate a pattern of disease progression, and resemble stages in neurogenesis. Cancer Cell 9:157–173. https://doi.org/10.1016/j.ccr.2006.02.019

Article  CAS  PubMed  Google Scholar 

Rao SAM, Srinivasan S, Patric IRP, Hegde AS, Chandramouli BA, Arimappamagan A, Santosh V, Kondaiah P, Rao MRS, Somasundaram K (2014) A 16-gene signature distinguishes anaplastic astrocytoma from glioblastoma. PloS one 9:e85200. https://doi.org/10.1371/journal.pone.0085200

Article  CAS  PubMed  PubMed Central  Google Scholar 

Robinson BH (1998) Human Complex i deficiency: clinical spectrum and involvement of oxygen free radicals in the pathogenicity of the defect. Biochim et Biophys Acta (BBA)—Bioenerg 1364:271–286. https://doi.org/10.1016/S0005-2728(98)00033-4

留言 (0)

沒有登入
gif