Two-trace two-dimensional correlation spectra (2T2D-COS) analysis using FTIR spectra to monitor the immune response by COVID-19

Beale DJ, Jones OA, Karpe AV, Dayalan S, Oh DY, Kouremenos KA, Ahmed W, Palombo EA (2016) A review of analytical techniques and their application in disease diagnosis in breathomics and salivaomics research. Int J Mol Sci 18(1):24. https://doi.org/10.3390/ijms18010024

Article  CAS  PubMed  PubMed Central  Google Scholar 

Katsiougiannis S, Chia D, Kim Y, Singh RP, Wong DT (2017) Saliva exosomes from pancreatic tumor-bearing mice modulate NK cell phenotype and antitumor cytotoxicity. FASEB J 31(3):998–1010. https://doi.org/10.1096/fj.201600984R

Article  CAS  PubMed  Google Scholar 

Senevirathna K, Jayawardana NU, Jayasinghe RD, Seneviratne B, Perera AGU (2021) Diagnostic value of FTIR spectroscopy, metabolomic screening and molecular genetics in saliva for early detection of oral squamous cell carcinoma (OSCC). Med Clin Res 6(2):435–454

Google Scholar 

Geyer PE, Kulak NA, Pichler G, Holdt LM, Teupser D, Mann M (2016) Plasma proteome profiling to assess human health and disease. Cell Syst 2(3):185–195. https://doi.org/10.1016/j.cels.2016.02.015

Article  CAS  PubMed  Google Scholar 

Dingess KA, Hoek M, van Rijswijk DMH, Tamara S, den Boer MA, Veth T, Damen MJA, Barendregt A, Romijn M, Juncker HG et al (2023) Identification of common and distinct origins of human serum and breastmilk IgA1 by mass spectrometry-based clonal profiling. Cell Mol Immunol 20(1):26–37. https://doi.org/10.1038/s41423-022-00954-2

Article  CAS  PubMed  Google Scholar 

Ceylani T, Teker HT, Keskin S, Samgane G, Acikgoz E, Gurbanov R (2023) The rejuvenating influence of young plasma on aged intestine. J Cell Mol Med 27(18):2804–2816. https://doi.org/10.1111/jcmm.17926

Article  PubMed  PubMed Central  Google Scholar 

Caetano Júnior PC, Ferreira Strixino J, Raniero L (2015) Analysis of saliva by Fourier transform infrared spectroscopy for diagnosis of physiological stress in athletes. Res Biomed Eng 31(2):116–124. https://doi.org/10.1590/2446-4740.0664

Article  Google Scholar 

Bunaciu AA, Hoang VD, Aboul-Enein HY (2015) Applications of FT-IR spectrophotometry in cancer diagnostics. Crit Rev Anal Chem 45(2):156–165. https://doi.org/10.1080/10408347.2014.904733

Article  CAS  PubMed  Google Scholar 

Calvo-Gomez O, Calvo H, Cedillo-Barrón L, Vivanco-Cid H, Alvarado-Orozco JM, Fernandez-Benavides DA, Arriaga-Pizano L, Ferat-Osorio E, Anda-Garay JC, López-Macias C et al (2022) Potential of ATR-FTIR-chemometrics in Covid-19: disease recognition. ACS Omega 7(35):30756–30767. https://doi.org/10.1021/acsomega.2c01374

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zhang L, Xiao M, Wang Y, Peng S, Chen Y, Zhang D, Zhang D, Guo Y, Wang X, Luo H et al (2021) Fast screening and primary diagnosis of COVID-19 by ATR-FT-IR. Anal Chem 93(4):2191–2199. https://doi.org/10.1021/acs.analchem.0c04049

Article  CAS  PubMed  Google Scholar 

Dogan A, Gurbanov R, Severcan M, Severcan F (2021) CoronaVac (Sinovac) COVID-19 vaccine-induced molecular changes in healthy human serum by infrared spectroscopy coupled with chemometrics. Turk J Biol 45(4):549–558. https://doi.org/10.3906/biy-2105-65

Article  CAS  PubMed  PubMed Central  Google Scholar 

Karthikeyan S, Mata-Miranda MM, Martinez-Cuazitl A, Delgado-Macuil RJ, Garibay-Gonzalez F, Sanchez-Monroy V, Lopez-Reyes A, Rojas-Lopez M, Rivera-Alatorre DE, Vazquez-Zapien GJ (2023) Dynamic response antibodies SARS-CoV-2 human saliva studied using two-dimensional correlation (2DCOS) infrared spectral analysis coupled with receiver operation characteristics analysis. Biochim Biophys Acta Mol Basis Dis 1869:166799. https://doi.org/10.1016/j.bbadis.2023.166799

Article  CAS  PubMed  Google Scholar 

Noda I (2022) Estimating more than two pure component spectra from only two mixture spectra using two-dimensional correlation. Spectrochim Acta Part A Mol Biomol Spectrosc 276:121221. https://doi.org/10.1016/j.saa.2022.121221

Article  CAS  Google Scholar 

Sohng W, Eum C, Chung H (2021) Exploring two-trace two-dimensional (2T2D) correlation spectroscopy as an effective approach to improve accuracy of discriminant analysis by highlighting asynchronous features in two separate spectra of a sample. Anal Chim Acta 1152:338255. https://doi.org/10.1016/j.aca.2021.338255

Article  CAS  PubMed  Google Scholar 

Park Y, Jin S, Noda I, Jung YM (2023) Continuing progress in the field of two-dimensional correlation spectroscopy (2D-COS): Part III. Versatile applications. Spectrochim Acta A Mol Biomol Spectrosc 284:121636. https://doi.org/10.1016/j.saa.2022.121636

Article  CAS  PubMed  Google Scholar 

Noda I (2018) Two-trace two-dimensional (2T2D) correlation spectroscopy — A method for extracting useful information from a pair of spectra. J Mol Struct 1160:471–478. https://doi.org/10.1016/j.molstruc.2018.01.091

Article  CAS  Google Scholar 

Noda I (2020) Close examination of two-trace two-dimensional (2T2D) correlation spectroscopy. J Mol Str 1213:128194. https://doi.org/10.1016/j.molstruc.2020.128194

Article  CAS  Google Scholar 

Noda I (2021) Two-trace two-dimensional correlation spectroscopy study of the crystallization behavior of bioplastics. Appl Spectrosc 75(8):963–970. https://doi.org/10.1177/00037028211014165

Article  CAS  PubMed  Google Scholar 

Park Y, Jin S, Noda I, Jung YM (2020) Emerging developments in two-dimensional correlation spectroscopy (2D-COS). J Mol Str 1217:128405. https://doi.org/10.1016/j.molstruc.2020.128405

Article  CAS  Google Scholar 

Kavitha E, Devaraj Stephen L, Brishti FH, Karthikeyan S (2021) Two-trace two-dimensional (2T2D) correlation infrared spectral analysis of Spirulina platensis and its commercial food products coupled with chemometric analysis. J Mol St 1244:130964. https://doi.org/10.1016/j.molstruc.2021.130964

Article  CAS  Google Scholar 

Chicco D, Jurman G (2020) The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation. BMC Genomics 21(1):6. https://doi.org/10.1186/s12864-019-6413-7

Article  PubMed  PubMed Central  Google Scholar 

Lovergne L, Ghosh D, Schuck R, Polyzos AA, Chen AD, Martin MC, Barnard ES, Brown JB, McMurray CT (2021) An infrared spectral biomarker accurately predicts neurodegenerative disease class in the absence of overt symptoms. Sci Rep 11(1):15598. https://doi.org/10.1038/s41598-021-93686-8

Article  CAS  PubMed  PubMed Central  Google Scholar 

Silva LG, Péres AFS, Freitas DLD, Morais CLM, Martin FL, Crispim JCO, Lima KMG (2020) ATR-FTIR spectroscopy in blood plasma combined with multivariate analysis to detect HIV infection in pregnant women. Sci Rep 10(1):20156. https://doi.org/10.1038/s41598-020-77378-3

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chicco D, Tötsch N, Jurman G (2021) The Matthews correlation coefficient (MCC) is more reliable than balanced accuracy, bookmaker informedness, and markedness in two-class confusion matrix evaluation. BioData Min 14(1):13. https://doi.org/10.1186/s13040-021-00244-z

Article  PubMed  PubMed Central  Google Scholar 

Bel’skaya LV, Sarf EA (2021) Biochemical composition and characteristics of salivary FTIR spectra: correlation analysis. J Mol Liquids 341:117380. https://doi.org/10.1016/j.molliq.2021.117380

Article  CAS  Google Scholar 

Martinez-Cuazitl A, Vazquez-Zapien GJ, Sanchez-Brito M, Limon-Pacheco JH, Guerrero-Ruiz M, Garibay-Gonzalez F, Delgado-Macuil RJ, de Jesus MGG, Corona-Perezgrovas MA, Pereyra-Talamantes A et al (2021) ATR-FTIR spectrum analysis of saliva samples from COVID-19 positive patients. Sci Rep 11(1):19980. https://doi.org/10.1038/s41598-021-99529-w

Article  CAS  PubMed  PubMed Central  Google Scholar 

Fujimoto S, Aoyagi M, Shinzawa H (2022) Nanodiamond (ND)-based polyamide (PA) 66 nanocomposite studied with infrared (IR) microscopy and time-domain nuclear magnetic resonance (TD-NMR) combined with two-trace two-dimensional (2T2D) correlation analysis. Spectrochim Acta Part A Mol Biomol Spectrosc 280:121572. https://doi.org/10.1016/j.saa.2022.121572

Article  CAS  Google Scholar 

Vazquez-Zapien GJ, Martinez-Cuazitl A, Sanchez-Brito M, Delgado-Macuil RJ, Atriano-Colorado C, Garibay-Gonzalez F, Sanchez-Monroy V, Lopez-Reyes A, Mata-Miranda MM (2022) Comparison of the immune response in vaccinated people positive and negative to SARS-CoV-2 employing FTIR spectroscopy. Cells 11(23):3884. https://doi.org/10.3390/cells11233884

Article  CAS  PubMed  PubMed Central  Google Scholar 

Martinez-Cuazitl A, Mata-Miranda MM, Sanchez-Brito M, Valencia-Trujillo D, Avila-Trejo Amanda M, Delgado-Macuil RJ, Atriano-Colorado C, Garibay-Gonzalez F, Sanchez-Monroy V, Vazquez-Zapien GJ (2023) Clinical, biochemical, and ATR-FTIR spectroscopic parameters associated with death or survival in patients with severe COVID-19. J Spectrosc 2023:3423183. https://doi.org/10.1155/2023/3423183

Article  CAS  Google Scholar 

Zahorec R (2021) Neutrophil-to-lymphocyte ratio, past, present and future perspectives. Bratisl Lek Listy 122(7):474–488. https://doi.org/10.4149/BLL_2021_078

Article  CAS  PubMed  Google Scholar 

Hossein-Khannazer N, Shokoohian B, Shpichka A, Aghdaei HA, Timashev P, Vosough M (2020) Novel therapeutic approaches for treatment of COVID-19. J Mol Med (Berl) 98(6):789–803. https://doi.org/10.1007/s00109-020-01927-6

Article  CAS  PubMed  Google Scholar 

Rodrigues RP, Aguiar EM, Cardoso-Sousa L, Caixeta DC, Guedes CC, Siqueira WL, Maia YCP, Cardoso SV, Sabino-Silva R (2019) Differential molecular signature of human saliva using ATR-FTIR spectroscopy for chronic kidney disease diagnosis. Braz Dent J 30(5):437–445. https://doi.org/10.1590/0103-6440201902228

Article  PubMed  Google Scholar 

留言 (0)

沒有登入
gif