Identification of SARS-CoV-2 biomarkers in saliva by transcriptomic and proteomics analysis

Goldman E. How the unvaccinated threaten the vaccinated for COVID-19: a Darwinian perspective. Proc Natl Acad Sci U S A. 2021. https://doi.org/10.1073/pnas.2114279118.

Article  PubMed  PubMed Central  Google Scholar 

Wu F, Zhao S, Yu B, Chen YM, Wang W, Song ZG, et al. A new coronavirus associated with human respiratory disease in China. Nature. 2020;579(7798):265–9.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Corman VM, Landt O, Kaiser M, Molenkamp R, Meijer A, Chu DK, et al. Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR. Euro Surveill. 2020;25(3):2000045.

Article  PubMed  PubMed Central  Google Scholar 

Bastos ML, Perlman-Arrow S, Menzies D, Campbell JR. The sensitivity and costs of testing for SARS-CoV-2 infection with saliva versus nasopharyngeal swabs: a systematic review and meta-analysis. Ann Intern Med. 2021;174(4):501–10.

Article  PubMed  Google Scholar 

Azzi L, Maurino V, Baj A, Dani M, d’Aiuto A, Fasano M, et al. Diagnostic salivary tests for SARS-CoV-2. J Dent Res. 2020;100(2):115–23.

Article  PubMed  Google Scholar 

Lippi G, Simundic AM, Plebani M. Potential preanalytical and analytical vulnerabilities in the laboratory diagnosis of coronavirus disease 2019 (COVID-19). Clin Chem Lab Med. 2020. https://doi.org/10.1515/cclm-2020-0285.

Article  PubMed  Google Scholar 

Stadlbauer D, Amanat F, Chromikova V, Jiang K, Strohmeier S, Arunkumar GA, et al. SARS-CoV-2 seroconversion in humans: a detailed protocol for a serological assay, antigen production, and test setup. Curr Protoc Microbiol. 2020;57(1): e100.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li Z, Yi Y, Luo X, Xiong N, Liu Y, Li S, et al. Development and clinical application of a rapid IgM-IgG combined antibody test for SARS-CoV-2 infection diagnosis. J Med Virol. 2020. https://doi.org/10.1002/jmv.25727.

Article  PubMed  PubMed Central  Google Scholar 

Tang YW, Schmitz JE, Persing DH, Stratton CW. The laboratory diagnosis of COVID-19 infection: current issues and challenges. J Clin Microbiol. 2020. https://doi.org/10.1128/JCM.00512-20.

Article  PubMed  PubMed Central  Google Scholar 

To KK, Tsang OT, Leung WS, Tam AR, Wu TC, Lung DC, et al. Temporal profiles of viral load in posterior oropharyngeal saliva samples and serum antibody responses during infection by SARS-CoV-2: an observational cohort study. Lancet Infect Dis. 2020. https://doi.org/10.1016/S1473-3099(20)30196-1.

Article  PubMed  PubMed Central  Google Scholar 

Zheng S, Fan J, Yu F, Feng B, Lou B, Zou Q, et al. Viral load dynamics and disease severity in patients infected with SARS-CoV-2 in Zhejiang province, China, January-March 2020: retrospective cohort study. BMJ. 2020;369: m1443.

Article  PubMed  PubMed Central  Google Scholar 

To KK, Tsang OT, Chik-Yan Yip C, Chan KH, Wu TC, Chan JMC, et al. Consistent detection of 2019 novel coronavirus in saliva. Clin Infect Dis. 2020. https://doi.org/10.1093/cid/ciaa149.

Article  PubMed  PubMed Central  Google Scholar 

Moreira VM, Mascarenhas P, Machado V, Botelho J, Mendes JJ, Taveira N, et al. Diagnosis of SARS-Cov-2 infection by RT-PCR using specimens other than naso- and oropharyngeal swabs: a systematic review and meta-analysis. Diagnostics (Basel). 2021;11(2):363.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sabino-Silva R, Jardim ACG, Siqueira WL. Coronavirus COVID-19 impacts to dentistry and potential salivary diagnosis. Clin Oral Investig. 2020. https://doi.org/10.1007/s00784-020-3248-x.

Article  PubMed  PubMed Central  Google Scholar 

Wong DT. Salivary diagnostics. J Calif Dent Assoc. 2006;34(4):283–5.

Article  PubMed  Google Scholar 

Siqueira WL, Dawes C. The salivary proteome: challenges and perspectives. Proteomics Clin Appl. 2011;5(11–12):575–9.

Article  CAS  PubMed  Google Scholar 

Khiabani K, Amirzade-Iranaq MH. Are saliva and deep throat sputum as reliable as common respiratory specimens for SARS-CoV-2 detection? A systematic review and meta-analysis. Am J Infect Control. 2021;49(9):1165–76.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kipping M, Tänzler D, Sinz A. A rapid and reliable liquid chromatography/mass spectrometry method for SARS-CoV-2 analysis from gargle solutions and saliva. Anal Bioanal Chem. 2021;413(26):6503–11.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dollman NL, Griffin JH, Downard KM. Detection, mapping, and proteotyping of SARS-CoV-2 coronavirus with high resolution mass spectrometry. ACS Infect Dis. 2020;6(12):3269–76.

Article  CAS  PubMed  Google Scholar 

Saadi J, Oueslati S, Bellanger L, Gallais F, Dortet L, Roque-Afonso AM, et al. Quantitative assessment of SARS-CoV-2 virus in nasopharyngeal swabs stored in transport medium by a straightforward LC-MS/MS assay targeting nucleocapsid, membrane, and spike proteins. J Proteome Res. 2021;20(2):1434–43.

Article  CAS  PubMed  Google Scholar 

Rocca MF, Zintgraff JC, Dattero ME, Santos LS, Ledesma M, Vay C, et al. A combined approach of MALDI-TOF mass spectrometry and multivariate analysis as a potential tool for the detection of SARS-CoV-2 virus in nasopharyngeal swabs. J Virol Methods. 2020;286: 113991.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Nachtigall FM, Pereira A, Trofymchuk OS, Santos LS. Detection of SARS-CoV-2 in nasal swabs using MALDI-MS. Nat Biotechnol. 2020;38(10):1168–73.

Article  CAS  PubMed  Google Scholar 

Singh P, Chakraborty R, Marwal R, Radhakrishan VS, Bhaskar AK, Vashisht H, et al. A rapid and sensitive method to detect SARS-CoV-2 virus using targeted-mass spectrometry. J Proteins Proteom. 2020;87:1–7.

Google Scholar 

Cardozo KHM, Lebkuchen A, Okai GG, Schuch RA, Viana LG, Olive AN, et al. Establishing a mass spectrometry-based system for rapid detection of SARS-CoV-2 in large clinical sample cohorts. Nat Commun. 2020;11(1):6201.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gouveia D, Miotello G, Gallais F, Gaillard J-C, Debroas S, Bellanger L, et al. Proteotyping SARS-CoV-2 virus from nasopharyngeal swabs: a proof-of-concept focused on a 3 min mass spectrometry window. J Proteome Res. 2020;19(11):4407–16.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rivera B, Leyva A, Portela MM, Moratorio G, Moreno P, Durán R, et al. Quantitative proteomic dataset from oro- and naso-pharyngeal swabs used for COVID-19 diagnosis: Detection of viral proteins and host’s biological processes altered by the infection. Data Brief. 2020;32: 106121.

Article  PubMed  PubMed Central  Google Scholar 

Ihling C, Tänzler D, Hagemann S, Kehlen A, Hüttelmaier S, Arlt C, et al. Mass spectrometric identification of SARS-CoV-2 proteins from gargle solution samples of COVID-19 patients. J Proteome Res. 2020;19(11):4389–92.

Article  CAS  PubMed  Google Scholar 

Yan L, Yi J, Huang C, Zhang J, Fu S, Li Z, et al. Rapid detection of COVID-19 using MALDI-TOF-based serum peptidome profiling. Anal Chem. 2021;93(11):4782–7.

Article  CAS  PubMed  Google Scholar 

Zuanazzi D, Arts EJ, Jorge PK, Mulyar Y, Gibson R, Xiao Y, et al. Postnatal identification of zika virus peptides from saliva. J Dent Res. 2017;96(10):1078–84.

Article  CAS  PubMed  Google Scholar 

McDonald EE, Goldberg HA, Tabbara N, Mendes FM, Siqueira WL. Histatin 1 resists proteolytic degradation when adsorbed to hydroxyapatite. J Dent Res. 2011;90(2):268–72.

Article  CAS  PubMed  Google Scholar 

Rabenau HF, Cinatl J, Morgenstern B, Bauer G, Preiser W, Doerr HW. Stability and inactivation of SARS coronavirus. Med Microbiol Immunol. 2005;194(1–2):1–6.

Article  CAS  PubMed  Google Scholar 

Sun X, Salih E, Oppenheim FG, Helmerhorst EJ. Kinetics of histatin proteolysis in whole saliva and the effect on bioactive domains with metal-binding, antifungal, and wound-healing properties. FASEB J. 2009;23:2691–701.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Nair M, Jagadeeshan S, Katselis G, Luan X, Momeni Z, Henao-Romero N, et al. Lipopolysaccharides induce a RAGE-mediated sensitization of sensory neurons and fluid hypersecretion in the upper airways. Sci Rep. 2021;11(1):8336.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215(3):403–10.

Article  CAS  PubMed  Google Scholar 

Yoshimoto FK. The proteins of severe acute respiratory syndrome coronavirus-2 (SARS CoV-2 or n-COV19), the cause of COVID-19. Protein J. 2020;39(3):198–216.

Article  CA

留言 (0)

沒有登入
gif