Geierstanger B.H., Wemmer D.E. 1995. Complexes of the minor groove of DNA. Annu. Rev. Biophys. Biomol. Struct. 24, 463‒493.
Article CAS PubMed Google Scholar
Krey A.K., Hahn F.E. 1970. Studies on the complex of distamycin A with calf thymus DNA. FEBS Lett. 10, 175‒178.
Article CAS PubMed Google Scholar
Harshman K.D., Dervan P.B. 1985. Molecular recognition of B-DNA by Hoechst 33258. Nucl. Acids Res. 13, 4825‒48354.
Article CAS PubMed PubMed Central Google Scholar
Dervan P.B. 2001. Molecular recognition of DNA by small molecules. Bioorg. Med. Chem. 9, 2215‒2235.
Article CAS PubMed Google Scholar
Dervan P.B., Buerli R.W. 1999. Sequence-specific DNA recognition by polyamides. Curr. Opin. Chem. B-iol. 3, 688‒693.
Wemmer D.E., Dervan P.B. 1997. Targeting the minor groove of DNA. Curr. Opin. Struct. Biol. 7, 355‒361.
Article CAS PubMed Google Scholar
Dervan P.B., Doss R.M., Marques M.A. 2005. Programmable DNA binding oligomers for control of transcription. Curr. Med. Chem.—Anti-Cancer Agents. 5, 373‒387.
Guo P., Paul A., Kumar A., Farahat A.A., Kumar D., Wang S., Boykin D.W., Wilson D.W. 2016. The thiophene “sigma-hole” as a concept for preorganized, specific recognition of G.C base pairs in the DNA minor groove. Chem. Eur. J. 22, 15404–15412.
Article CAS PubMed Google Scholar
Guo P., Farahat A.A., Paul A., Hanka N.K., Boykin D.V., Wilson W.D. 2018. Compound shape effects in minor groove binding affinity and specificity for mixed sequence DNA. J. Am. Chem. Soc. 140, 14761‒14769.
Article CAS PubMed PubMed Central Google Scholar
Wilson W.D., Paul A. 2022. Compound shape and substituent effects in DNA minor groove interactions. In Handbook of Chemical Biology of Nucleic Acids. Sugimoto N., Ed. Springer Nature Singapore Pte Ltd., p. 1‒39.
Paul A., Nanjunda R., Wilson W.D. 2023. Binding to the DNA minor groove by heterocyclic dications from AT specific to GC recognition compounds. Curr. Protocols. 3 (4), e729.
O’Boyle N.M., Banck M., Craig A.J., Morley C., Vandermeersch T., Hutchison G.R. 2011. Open Babel: An open chemical toolbox. J. Cheminf. 3, 1‒14.
Korb O., Stützle T., Exner T.E. 2007. An ant colony optimization approach to flexible protein–ligand docking. Swarm Intelligence. 1, 115134.
Teng M.K., Usman N., Frederick C.A., Wang A.H. 1988. The molecular structure of the complex of Hoechst 33258 and the DNA dodecamer d (CGCGAATTCGCG. Nucleic Acids Res. 16, 2671‒2690.
Article CAS PubMed PubMed Central Google Scholar
Finlay A.C., Hochstein F.A., Sobin B.A., Murphy F.X. 1951. Netropsin, a new antibiotic produced by a Streptomyces. J. Am. Chem. Soc. 73, 341‒344.
Zasedatelev A.S., Borodulin V.B., Grokhovsky S.L., Nikitin A.M., Salmanova D.V., Zhuze A.L., Gursky G.V., Shafer R.H. 1995. Mono-, di- and trimeric binding of a bis-netropsin to DNA. FEBS Lett. 375, 304‒306.
Article CAS PubMed Google Scholar
Makarska-Bialokoz M. 2014. Fluorescence quenching effect of guanine interacting with water-soluble cationic porphyrin. J. Lumin. 47, 27‒33.
Comments (0)