Toyofuku M., Nomura N., Eberl L. 2019. Types and origins of bacterial membrane vesicles. Nat. Rev. Micro-biol. 17, 13–24.
Vitse J., Devreese B. 2020. The contribution of membrane vesicles to bacterial pathogenicity in cystic fibrosis infections and healthcare associated pneumonia. Front. Microbiol. 11, 630.
Article PubMed PubMed Central Google Scholar
Cao Y., Lin H. 2021. Characterization and function of membrane vesicles in Gram-positive bacteria. Appl. Microbiol. Biotechnol. 105 (5), 1795–1801.
Article CAS PubMed Google Scholar
Stentz R., Jones E., Juodeikis R., Wegmann U., Guirro M., Goldson A.J., Brion A., Booth C., Sudhakar P., Brown I.R., Korcsmáros T., Carding S.R. 2022. The proteome of extracellular vesicles produced by the human gut bacteria Bacteroides thetaiotaomicron in vivo is influenced by environmental and host-derived factors. Appl. Environ. Microbiol. 88 (16), e0053322.
Liu J., Hsieh C.L., Gelincik O., Devolder B., Sei S., Zhang S., Lipkin S.M., Chang YF. 2019. Proteomic characterization of outer membrane vesicles from gut mucosa-derived Fusobacterium nucleatum. J. Proteomics. 195, 125–137.
Article CAS PubMed Google Scholar
Zhang K., Chu P., Song S., Yang D., Bian Z., Li Y., Gou H., Jiang Z., Cai R., Li C. 2021. Proteome analysis of outer membrane vesicles from a highly virulent strain of Haemophilus parasuis. Front. Vet. Sci. 8, 756764.
Article PubMed PubMed Central Google Scholar
Terán L.C., Distefano M., Bellich B., Petrosino S., Bertoncin P., Cescutti P., Sblattero D. 2020. Proteomic studies of the biofilm matrix including outer membrane vesicles of Burkholderia multivorans C1576, a strain of clinical importance for cystic fibrosis. Microorganisms. 8 (11), 1826.
Article PubMed PubMed Central Google Scholar
Zanella I., König E. Tomasi M., Gagliardi A, Frattini L., Fantappiè L., Irene C., Zerbini F., Caproni E., Isaac S.J., Grigolato M., Corbellari R., Valensin S., Ferlenghi I., Giusti F., Bini L., Ashhab Y., Grandi A., Grandi G. 2021. Proteome-minimized outer membrane vesicles from Escherichia coli as a generalized vaccine platform. J. Extracell Vesicles. 10 (4), e12066.
Article CAS PubMed PubMed Central Google Scholar
Lee E.Y, Choi D.Y., Kim D.K. 2009. Gram-positive bacteria produce membrane vesicles: Proteomics-based characterization of Staphylococcus aureus-derived membrane vesicles. Proteomics. 9 (24), 5425–5436.
Article CAS PubMed Google Scholar
Bitto N.J., Cheng L., Johnston E.L., Pathirana R., Phan T.K., Poon I.K.H., O’Brien-Simpson N.M., Hill A.F., Stinear T.P., Kaparakis-Liaskos M. 2021. Staphylococcus aureus membrane vesicles contain immunostimulatory DNA, RNA and peptidoglycan that activate innate immune receptors and induce autophagy. J. Extracell. Vesicles. 10 (6), e12080.
Article CAS PubMed PubMed Central Google Scholar
Olaya-Abril A., Prados-Rosales R., McConnell M.J., Martín-Peña R., González-Reyes J.A., Jiménez-Munguía I., Gómez-Gascón L., Fernández J., Luque-García J.L., García-Lidón C., Estévez H., Pachón J., Obando I., Casadevall A., Pirofski L.A., Rodríguez-Ortega M.J. 2014. Characterization of protective extracellular membrane-derived vesicles produced by Streptococcus pneumoniae. J. Proteomics. 106, 46–60.
Article CAS PubMed Google Scholar
Kim Y., Edwards N., Fenselau C. 2016. Extracellular vesicle proteomes reflect developmental phases of Bacillus subtilis. Clin. Proteomics. 13, 6.
Article PubMed PubMed Central Google Scholar
Alkandari S.A., Bhardwaj R.G., Ellepola A., Karched M. 2020. Proteomics of extracellular vesicles produced by Granulicatella adiacens, which causes infective endocarditis. PLoS One. 15 (11), e0227657.
Article CAS PubMed PubMed Central Google Scholar
Ilinskaya O.N., Mahmud R.S. 2014. Ribonucleases as antiviral agents. Mol. Biol. 48 (5), 615–623.
Article CAS PubMed PubMed Central Google Scholar
Shah Mahmud R., Efimova M.A., Ulyanova V., Ravilov R.K., Shuralev E.A., Kolpakov A., Ilinskaya O. 2020. Bacillus pumilus ribonuclease rescues mice infected by double-stranded RNA-containing reovirus serotype 1. Virus Res. 286, 198086.
Article CAS PubMed Google Scholar
Ulyanova V., Shah Mahmud R., Laikov A., Dudkina E., Markelova M., Mostafa A., Pleschka S., Ilinskaya O. 2020. Anti-influenza activity of the ribonuclease binase: Cellular targets detected by quantitative proteomics. Int. J. Mol. Sci. 21 (21), 8294.
Article CAS PubMed PubMed Central Google Scholar
Garipov A.R., Nesmelov A.A., Cabrera-Fuentes H.A., Ilinskaya O.N. 2014. Bacillus intermedius ribonuclease (BINASE) induces apoptosis in human ovarian cancer cells. Toxicon. 92, 54–59.
Article CAS PubMed Google Scholar
Mitkevich V.A., Kretova O.V., Petrushanko I.Y., Burnysheva K.M., Sosin D.V., Simonenko O.V., Ilinskaya O.N., Tchurikov N.A., Makarov A.A. 2013. Ribonuclease binase apoptotic signature in leukemic Kasumi-1 cells. Biochimie. 95 (6), 1344–1349.
Article CAS PubMed Google Scholar
Ilinskaya O.N., Singh I., Dudkina E., Ulyanova V., Kayumov A., Barreto G. 2016. Direct inhibition of oncogenic KRAS by Bacillus pumilus ribonuclease (binase). Biochim. Biophys. Acta. 1863 (7 Pt A), 1559–1567.
Faizullin D., Valiullina Y., Salnikov V., Zelenikhin P., Zuev Y., Ilinskaya O. 2023. Fibrin-rhamnogalacturonan I composite gel for therapeutic enzyme delivery to intestinal tumors. Int. J. Mol. Sci. 24 (2), 926.
Article CAS PubMed PubMed Central Google Scholar
Kharitonova M.A., Kolpakov A.I., Kupriyanova-Ashina F.G. 2018. Intensification of secreted Bsn ribonuclease Bacillus subtilis production under salt stress. Vestn. Biotekhnol. Fiz.-Khim. Biol. im. Ovchinnikova, 14 (2), 42–47.
Arinushkina E.V. 1970. Rukovodstvo po khimicheskomu analizu pochv (Guide to the Chemical Analysis of Soils). Moscow: Mosk. Gos. Univ.
Liao Y., Smyth G.K., Shi W. 2014. featureCounts: An efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics. 30 (7), 923–930.
Article CAS PubMed Google Scholar
Konovalova O.A., Yakovleva G.Yu., Steryakov O.V., Trushin M.V. 2013. Scanning probe microscopy in the study of morphometric changes and physical parameters of Escherichia coli bacteria under the action of 2,4,6-trinitrotoluene. W. Appl. Sci. J. 23 (4), 507–509.
Chernov V.M., Chernova O.A., Mouzykantov A.A., Efimova I.R., Shaymardanova G.F., Medvedeva E.S., Trushin M.V. 2011. Extracellular vesicles derived from Acholeplasma laidlawii PG8. Sci. World J. 11, 1120–1130.
Yu N.Y., Wagner J.R., Laird M.R., Melli G., Rey S., Lo R., Dao P., Sahinalp S.C., Ester M., Foster L.J., Brinkman F.S.L. 2010. PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics. 26 (13), 1608–1615.
Article CAS PubMed PubMed Central Google Scholar
Kanehisa M., Sato Y., Morishima K. 2016). BlastKOA-LA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences. J. Mol. Biol. 428, 726–731.
Article CAS PubMed Google Scholar
Goedhart J., Luijsterburg M.S. 2020. VolcaNoseR is a web app for creating, exploring, labeling and sharing volcano plots. Sci. Rep. 10, 20560.
Article ADS CAS PubMed PubMed Central Google Scholar
Adhikari S., Curtis P.D. 2016. DNA methyltransferases and epigenetic regulation in bacteria. FEMS Microbiol. Rev. 40 (5), 575–591.
Article CAS PubMed Google Scholar
Dorward D.W., Garon C.F. 1990. DNA is packaged within membrane-derived vesicles of Gram-negative but not Gram-positive bacteria. Appl. Environ. Microbiol. 56 (6), 1960–1962.
Article ADS CAS PubMed PubMed Central Google Scholar
Jiang Y., Kong Q., Roland K.L., Curtiss R. 2014. Membrane vesicles of Clostridium perfringens type A strains induce innate and adaptive immunity. Int. J. Med. Microbiol. 304 (3–4), 431–443.
Article CAS PubMed PubMed Central Google Scholar
Liao S., Klein M.I., Heim K.P., Fan Y, Bitoun J.P., Ahn S.J., Burne R.A., Koo H, Brady L.J., Wen Z.T. 2014. Streptococcus mutans extracellular DNA is upregulated during growth in biofilms, actively released via membrane vesicles, and influenced by components of the protein secretion machinery. J. Bacteriol. 196 (13), 2355–2366.
Article PubMed PubMed Central Google Scholar
Mendelson N.H., Bourque A., Wilkening K., Anderson K.R., Watkins J.C. 1999. Organized cell swimming motions in Bacillus subtilis colonies: Patterns of short-lived whirls and jets. J. Bacteriol. 181 (2), 600–609.
Article CAS PubMed PubMed Central Google Scholar
Guttenplan S.B., Kearns D.B. 2013. Regulation of flagellar motility during biofilm formation. FEMS Microbiol. Rev. 37 (6), 849–871.
Article CAS PubMed Google Scholar
Barnhart M.M., Chapman M.R. 2006. Curli biogenesis and function. Annu. Rev. Microbiol. 60, 131–147.
留言 (0)