Barnett R. Schistosomiasis. (1474–547X (Electronic)).

Steinmann P, Keiser J, Bos R, Tanner M, Utzinger J. Schistosomiasis and water resources development: systematic review, meta-analysis, and estimates of people at risk. Lancet Infect Dis. 2006;6(7):411–25.

Article  PubMed  Google Scholar 

Uthailak N, Adisakwattana P, Thiangtrongjit T, Limpanont Y, Chusongsang P, Chusongsang Y, et al. Discovery of Schistosoma mekongi circulating proteins and antigens in infected mouse sera. PLoS ONE. 2022;17(10):e0275992.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lin D, Zeng X, Sanogo B, He P, Xiang S, Du S, et al. The potential risk of Schistosoma mansoni transmission by the invasive freshwater snail Biomphalaria straminea in South China. PLoS Negl Trop Dis. 2020;14(6):e0008310.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Barsoum RS, Esmat G, El-Baz T. Human schistosomiasis: clinical perspective: review. J Adv Res. 2013;4(5):433–44.

Article  PubMed  PubMed Central  Google Scholar 

Gordon CA, Kurscheid J, Williams GM, Clements ACA, Li Y, Zhou XN, et al. Asian schistosomiasis: current status and prospects for control leading to elimination. Trop Med Infect Dis. 2019;4(1):40.

Article  PubMed  PubMed Central  Google Scholar 

Attwood SW, Liu L, Huo GN. Population genetic structure and geographical variation in Neotricula aperta (Gastropoda: Pomatiopsidae), the snail intermediate host of Schistosoma mekongi (Digenea: Schistosomatidae). PLoS Negl Trop Dis. 2019;13(1):e0007061.

Article  PubMed  PubMed Central  Google Scholar 

Attwood SW, Fatih FA, Upatham ES. DNA-sequence variation among Schistosoma mekongi populations and related taxa; phylogeography and the current distribution of Asian schistosomiasis. PLoS Negl Trop Dis. 2008;2(3):e200.

Article  PubMed  PubMed Central  Google Scholar 

Phuphisut O, Ajawatanawong P, Limpanont Y, Reamtong O, Nuamtanong S, Ampawong S, et al. Transcriptomic analysis of male and female Schistosoma mekongi adult worms. Parasit Vectors. 2018;11(1):504.

Article  PubMed  PubMed Central  Google Scholar 

Gray DJ, Ross AG, Li YS, McManus DP. Diagnosis and management of schistosomiasis. BMJ. 2011;342:d2651.

Article  PubMed  PubMed Central  Google Scholar 

McManus DP, Dunne DW, Sacko M, Utzinger J, Vennervald BJ, Zhou XN. Schistosomiasis. Nat Rev Dis Primers. 2018. https://doi.org/10.1038/s41572-018-0013-8.

Article  PubMed  Google Scholar 

Hamid HKS. Schistosoma japonicum-associated colorectal cancer: a review. Am J Trop Med Hyg. 2019;100(3):501–5.

Article  CAS  PubMed  Google Scholar 

Colley DG, Bustinduy AL, Secor WE, King CH. Human schistosomiasis. Lancet. 2014;383(9936):2253–64.

Article  PubMed  PubMed Central  Google Scholar 

Schistosoma japonicum Genome S, Functional Analysis C. The Schistosoma japonicum genome reveals features of host-parasite interplay. Nature. 2009;460(7253):345–51

Vale N, Gouveia MJ, Rinaldi G, Brindley PJ, Gartner F, da Costa JMC. Praziquantel for schistosomiasis: single-drug metabolism revisited, mode of action, and resistance. Antimicrob Agents Chemother. 2017. https://doi.org/10.1128/AAC.02582-16.

Article  PubMed  PubMed Central  Google Scholar 

Tebeje BM, Harvie M, You H, Loukas A, McManus DP. Schistosomiasis vaccines: where do we stand? Parasit Vectors. 2016. https://doi.org/10.1186/s13071-016-1799-4.

Article  PubMed  PubMed Central  Google Scholar 

Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, et al. The genome of the blood fluke Schistosoma mansoni. Nature. 2009;460(7253):352–8.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Young ND, Jex AR, Li B, Liu S, Yang L, Xiong Z, et al. Whole-genome sequence of Schistosoma haematobium. Nat Genet. 2012;44(2):221–5.

Article  CAS  PubMed  Google Scholar 

Stroehlein AJ, Korhonen PK, Chong TM, Lim YL, Chan KG, Webster B, et al. High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing. Gigascience. 2019. https://doi.org/10.1093/gigascience/giz108.

Article  PubMed  PubMed Central  Google Scholar 

Stroehlein AJ, Korhonen PK, Lee VV, Ralph SA, Mentink-Kane M, You H, et al. Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation. PLoS Pathog. 2022;18(2):e1010288.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Luo F, Yin M, Mo X, Sun C, Wu Q, Zhu B, et al. An improved genome assembly of the fluke Schistosoma japonicum. PLoS Negl Trop Dis. 2019;13(8):e0007612.

Article  PubMed  PubMed Central  Google Scholar 

Xu X, Wang Y, Wang C, Guo G, Yu X, Dai Y, et al. Chromosome-level genome assembly defines female-biased genes associated with sex determination and differentiation in the human blood fluke Schistosoma japonicum. Mol Ecol Resour. 2023;23(1):205–21.

Article  CAS  PubMed  Google Scholar 

Ohmae H, Sinuon M, Kirinoki M, Matsumoto J, Chigusa Y, Socheat D, et al. Schistosomiasis mekongi: from discovery to control. Parasitol Int. 2004;53(2):135–42.

Article  PubMed  Google Scholar 

Chai JY, Jung BK. Epidemiology of trematode infections: an update. Adv Exp Med Biol. 2019;1154:359–409.

Article  PubMed  Google Scholar 

Melo FL, Gomes AL, Barbosa CS, Werkhauser RP, Abath FG. Development of molecular approaches for the identification of transmission sites of schistosomiasis. Trans R Soc Trop Med Hyg. 2006;100(11):1049–55.

Article  CAS  PubMed  Google Scholar 

Ruan J, Li H. Fast and accurate long-read assembly with wtdbg2. Nat Methods. 2020;17(2):155–8.

Article  CAS  PubMed  Google Scholar 

Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, et al. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS ONE. 2014;9(11):e112963.

Article  PubMed  PubMed Central  Google Scholar 

Adey A, Kitzman JO, Burton JN, Daza R, Kumar A, Christiansen L, et al. In vitro, long-range sequence information for de novo genome assembly via transposase contiguity. Genome Res. 2014;24(12):2041–9.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Burton JN, Adey A, Patwardhan RP, Qiu R, Kitzman JO, Shendure J. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions. Nat Biotechnol. 2013;31(12):1119–25.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, et al. BLAST+: architecture and applications. BMC Bioinf. 2009;10:421.

Article  Google Scholar 

Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25(14):1754–60.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Laetsch D, Blaxter M. BlobTools: interrogation of genome assemblies [version 1; peer review: 2 approved with reservations]. F1000Research. 2017;6:1287.

Article  Google Scholar 

Manni M, Berkeley MR, Seppey M, Simao FA, Zdobnov EM. BUSCO Update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes. Mol Biol Evol. 2021;38(10):4647–54.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, et al. GeSeq—versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 2017;45(W1):W6–11.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Greiner S, Lehwark P, Bock R. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 2019;47(W1):W59–64.

Article  CAS  PubMed  PubMed Central  Google Scholar 

McCarthy EM, McDonald JF. LTR_STRUC: a novel search and identification program for LTR retrotransposons. Bioinformatics. 2003;19(3):362–7.

Article  CAS  PubMed  Google Scholar 

Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32(5):1792–7.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rice P, Longden I, Bleasby A. EMBOSS: the European molecul