Identification of potential biomarkers for melanoma cancer (black tumor) using bioinformatics strategy: a study based on GEO and SRA datasets

Barrett T, Suzek TO, Troup DB et al (2005) NCBI GEO: mining millions of expression profiles—database and tools. Nucleic Acids Res 33:D562–D566

Article  CAS  PubMed  Google Scholar 

Chen C, Chen H, Zhang Y et al (2020) TBtools: an integrative toolkit developed for interactive analyses of big biological data. Mol Plant 13:1194–1202

Article  CAS  PubMed  Google Scholar 

Cichorek M, Wachulska M, Stasiewicz A et al (2013) Skin melanocytes: biology and development. Adv Dermatol Allergol/postępy Dermatologii i Alergologii 30:30–41

Article  Google Scholar 

Cv M, Huynen M, Jaeggi D et al (2003) STRING: a database of predicted functional associations between proteins. Nucleic Acids Res 31:258–261

Article  Google Scholar 

Frost JA, Webster KE, Bryant A, et al. (2017) Lymphadenectomy for the management of endometrial cancer. Cochrane Database Syst Rev. 2017(10)

Gautier L, Cope L, Bolstad BM et al (2004) affy—analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20:307–315

Article  CAS  PubMed  Google Scholar 

Houghton AN, Polsky D (2002) Focus on Melanoma. Cancer Cell 2:275–278

Article  CAS  PubMed  Google Scholar 

Katalinic A, Kunze U, Schäfer T (2003) Epidemiology of cutaneous melanoma and non-melanoma skin cancer in Schleswig-Holstein, Germany: incidence, clinical subtypes, tumour stages and localization (epidemiology of skin cancer). Br J Dermatol 149:1200–1206

Article  CAS  PubMed  Google Scholar 

Langdon WB (2015) Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks. BioData Mining 8:1–7

Article  CAS  PubMed  PubMed Central  Google Scholar 

Leung AM, Hari DM, Morton DL (2012) Surgery for distant melanoma metastasis. Cancer J 18:176

Article  CAS  PubMed  PubMed Central  Google Scholar 

Linares MA, Zakaria A, Nizran P (2015) Skin cancer. Primary Care: Clinics in Office Practice 42:645–659

Article  PubMed  Google Scholar 

Longo C, Pellacani G (2016) Melanomas. Dermatol Clin 34:411–419

Article  PubMed  Google Scholar 

Madan V, Lear JT, Szeimies R-M (2010) Non-Melanoma Skin Cancer. Lancet 375:673–685

Article  CAS  PubMed  Google Scholar 

Marchler-Bauer A, Derbyshire MK, Gonzales NR et al (2015) CDD: NCBI’s conserved domain database. Nucleic Acids Res 43:D222–D226

Article  CAS  PubMed  Google Scholar 

Marguerat S, Bähler J (2010) RNA-seq: from technology to biology. Cell Mol Life Sci 67:569–579

Article  CAS  PubMed  Google Scholar 

Nair CK, Parida DK, Nomura T (2001) Radioprotectors in radiotherapy. J Radiat Res 42:21–37

Article  CAS  PubMed  Google Scholar 

O’Leary NA, Wright MW, Brister JR et al (2016) Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation. Nucleic Acids Res 44:D733–D745

Article  PubMed  Google Scholar 

Petrella F, Diotti C, Rimessi A et al (2017) Pulmonary metastasectomy: an overview. J Thorac Dis 9:S1291

Article  PubMed  PubMed Central  Google Scholar 

Ritchie ME, Phipson B, Wu D et al (2015) limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res 43:e47–e47

Article  PubMed  PubMed Central  Google Scholar 

Sawyers C (2004) Targeted cancer therapy. Nature 432:294–297

Article  CAS  PubMed  Google Scholar 

Smoot ME, Ono K, Ruscheinski J et al (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27:431–432

Article  CAS  PubMed  Google Scholar 

Till SJ, Francis JN, Nouri-Aria K et al (2004) Mechanisms of immunotherapy. J Allerg Clin Immunol 113:1025–1034

Article  CAS  Google Scholar 

Vilar S, Cozza G, Moro S (2008) Medicinal chemistry and the molecular operating environment (MOE): application of QSAR and molecular docking to drug discovery. Curr Top Med Chem 8:1555–1572

Article  CAS  PubMed  Google Scholar 

Vivanti R, Szeskin A, Lev-Cohain N et al (2017) Automatic detection of new tumors and tumor burden evaluation in longitudinal liver CT scan studies. Int J Comput Assist Radiol Surg 12:1945–1957

Article  CAS  PubMed  Google Scholar 

Yang J, Yan R, Roy A et al (2015) The I-TASSER Suite: protein structure and function prediction. Nat Methods 12:7–8

Article  CAS  PubMed  PubMed Central  Google Scholar 

留言 (0)

沒有登入
gif