Expression, Interaction, and Role of Pseudogene Adh6-ps1 in Cancer and other Disease Phenotypes

1. Szalai, G, Duester, G, Friedman, R, et al. Organization of six functional mouse alcohol dehydrogenase genes on two overlapping bacterial artificial chromosomes. Eur J Biochem. 2002;269:224-232. doi:10.1046/j.0014-2956.2001.02642.x.
Google Scholar | Crossref | Medline2. Szalai, G, Veres, M, Duester, G, Lawther, R, Lockhart, M, Felder, MR. Tissue expression pattern of class II and class V genes found in the Adh complex on mouse chromosome 3. Biochem Genet. 2008;46:685-695. doi:10.1007/s10528-008-9180-8.
Google Scholar | Crossref | Medline3. Harrison, PM . Computational methods for pseudogene annotation based on sequence homology. In: Poliseno, L , ed. Pseudogenes. Methods in Molecular Biology (Methods and Protocols). Vol. 1167. New York, NY: Humana Press; 2014:35-48. doi:10.1007/978-1-4939-0835-6_3.
Google Scholar | Crossref4. Rouchka, CE, Cha, EI. Current trends in pseudogene detection and characterization. Curr Bioinform. 2009;4:112-119.
Google Scholar | Crossref5. Zheng, D, Gerstein, MB. A computational approach for identifying pseudogenes in the ENCODE regions. Genome Biol. 2006;7:S13. doi:10.1186/gb-2006-7-s1-s13.
Google Scholar | Crossref | Medline6. Yu, Z, Morais, D, Ivanga, M, Harrison, PM. Analysis of the role of retrotransposition in gene evolution in vertebrates. BMC Bioinformatics. 2007;8:308.
Google Scholar | Crossref | Medline7. Hubbard, T, Andrews, D, Caccamo, M, et al. Ensembl 2005. Nucleic Acids Res. 2005;33:D447-D453.
Google Scholar8. Mouse Genome Informatics Web Site (MGI) . Mouse Sequences Summary Report. Bar Harbor, ME: The Jackson Laboratory; 2021. http://www.informatics.jax.org/sequence/marker/MGI:1918999. Accessed February 27, 2021.
Google Scholar9. Altschul, SF, Gish, W, Miller, W, Myers, EW, Lipman, DJ. Basic local alignment search tool. J Mol Biol. 1990;215:403-410.
Google Scholar | Crossref | Medline | ISI10. Kent, WJ, Sugnet, CW, Furey, TS, et al. UCSC Genome Browser: UCSC Genome Browser on Mouse Jun. 2020 (GRCm39/mm39) assembly. Genome Res. 2002;12:996-1006.
Google Scholar | Crossref | Medline | ISI11. Boratyn, GM, Schaffer, AA, Agarwala, R, Altschul, SF, Lipman, DJ, Madden, TL. Domain enhanced lookup time accelerated BLAST. Biol Direct. 2012;7:12. doi:10.1186/1745-6150-7-12.
Google Scholar | Crossref | Medline | ISI12. Hruz, T, Laule, O, Szabo, G, et al. Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes. Adv Bioinformatics. 2008;2008:420747. doi:10.1155/2008/420747.
Google Scholar | Crossref | Medline13. The Alliance of Genome Resources Consortium . Alliance of Genome Resources Portal: unified model organism research platform. Nucleic Acids Res. 2020;48:D650-D658. doi:10.1093/nar/gkz813.
Google Scholar | Crossref14. Stamatoyannopoulos, JA, Snyder, M, Hardison, R, et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol. 2012;13:418.
Google Scholar | Crossref | Medline15. Cook, SA, Akeson, EC, Calvano, C, et al. Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93:77-82. doi:10.1159/000056953.
Google Scholar | Crossref | Medline16. Roderick, TH . Using inversions to detect and study recessive lethals and detrimentals in mice. In: de Serres, FJ, Sheridan, W, eds. Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. New York, NY: Plenum Publishing Corp; 1983:135-167.
Google Scholar17. Tello-Ruiz, MK, Marco, CF, Hsu, FM, et al. Double triage to identify poorly annotated genes in maize: the missing link in community curation. PLoS ONE. 2019;14:e0224086. doi:10.1371/journal.pone.0224086.
Google Scholar | Crossref | Medline18. Hu, Y, Yang, Z, Bao, D, Ni, JS, Lou, J. miR-455-5p suppresses hepatocellular carcinoma cell growth and invasion via IGF-1R/AKT/GLUT1 pathway by targeting IGF-1R. Pathol Res Pract. 2019;215:152674.
Google Scholar | Crossref | Medline19. Mohr, AM, Mott, JL. Overview of microRNA biology. Semin Liver Dis. 2015;35:3-11.
Google Scholar | Crossref | Medline | ISI20. Chai, J, Wang, S, Han, D, Dong, W, Xie, C, Guo, H. MicroRNA-455 inhibits proliferation and invasion of colorectal cancer by targeting RAF proto-oncogene serine/threonine-protein kinase. Tumour Biol. 2015;36:1313-1321. doi:10.1007/s13277-014-2766-3.
Google Scholar | Crossref | Medline21. Nwadiugwu, MC. Thyroid tumor: investigating MicroRNA-21 gene suppression in FTC and FTA. Cancer Informatics. 2020; 19: 1176935120948474. doi:10.1177/1176935120948474.
Google Scholar | SAGE Journals22. Fornari, F, Gramantieri, L, Callegari, E, et al. MicroRNAs in animal models of HCC. Cancers (Basel). 2019;11:1906. doi:10.3390/cancers11121906.
Google Scholar | Crossref23. Adams, JM, Jafar-Nejad, H. The roles of notch signaling in liver development and disease. Biomolecules. 2019;9:608. doi:10.3390/biom9100608.
Google Scholar | Crossref24. Shen, J, Siegel, AB, Remotti, H, Wang, Q, Santella, RM. Identifying microRNA panels specifically associated with hepatocellular carcinoma and its different etiologies. Hepatoma Res. 2016;2:151-162. doi:10.20517/2394-5079.2015.66.
Google Scholar | Crossref | Medline25. Liu, J, Zhang, J, Li, Y, Wang, L, Sui, B, Dai, D. MiR-455-5p acts as a novel tumor suppressor in gastric cancer by down-regulating RAB18. Gene. 2016;591:308-315. doi:10.1016/j.gene.2016.07.034.
Google Scholar | Crossref26. Ihira, K, Dong, P, Xiong, Y, et al. EZH2 inhibition suppresses endometrial cancer progression via miR-361/Twist axis. Oncotarget. 2017;8:13509-13520. https://www.oncotarget.com/article/14586/text/
Google Scholar27. Xiao, J, Sekhwal, MK, Li, P, et al. Pseudogenes and their genome-wide prediction in plants. Int J Mol Sci. 2016;17:1991. doi:10.3390/ijms17121991.
Google Scholar | Crossref

留言 (0)

沒有登入
gif