Abedi A, Hajiahmadi Z, Kordrostami M, Esmaeel Q, Jacquard C (2021) Analyses of lysin-motif receptor-like kinase (lysm-rlk) gene family in allotetraploid brassica Napus l. and its progenitor species: an in Silico study. Cells 11(1):37. https://doi.org/10.3390/cells11010037
Article CAS PubMed PubMed Central Google Scholar
Arabia S, Sami AA, Akhter S, Sarker RH, Islam T (2021) Comprehensive in Silico characterization of universal stress proteins in rice (Oryza sativa L.) with insight into their stress-specific transcriptional modulation. Front Plant Sci 12:712607. https://doi.org/10.3389/fpls.2021.712607
Article PubMed PubMed Central Google Scholar
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37(suppl2):W202–W208. https://doi.org/10.1093/nar/gkp335
Article CAS PubMed PubMed Central Google Scholar
Belinky F, Babenko VN, Rogozin IB, Koonin EV (2018) Purifying and positive selection in the evolution of stop codons. Sci Rep 8(1):9260. https://doi.org/10.1101/gr.6759507
Article CAS PubMed PubMed Central Google Scholar
Bhuria M, Goel P, Kumar S, Singh AK (2016) The promoter of atusp is co-regulated by phytohormones and abiotic stresses in Arabidopsis Thaliana. Front Plant Sci 7:237715. https://doi.org/10.3389/fpls.2016.01957
Bhuria M, Goel P, Kumar S, Singh AK (2019) Genome-wide identification and expression profiling of genes encoding universal stress proteins (USP) identify multi-stress responsive USP genes in Arabidopsis Thaliana. Plant Physiol Rep 24(3):434–445. https://doi.org/10.1007/s40502-019-00468-6
Biłas R, Szafran K, Hnatuszko-Konka K, Kononowicz AK (2016) Cis-regulatory elements used to control gene expression in plants. Plant Cell Tissue Organ Cult 127:269–287. https://doi.org/10.1007/s11240-016-1057-7
Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B (2014) Early allopolyploid evolution in the post-Neolithic brassica Napus oilseed genome. Science 345(6199):950–953. https://doi.org/10.1126/science.1253435
Article CAS PubMed Google Scholar
Chen C, Wu Y, Li J, Wang X, Zeng Z, Xu J, Liu Y, Feng J, Chen H, He Y (2023) TBtools-II: A one for all, all for one bioinformatics platform for biological big-data mining. Mol Plant 16(11):1733–1742. https://doi.org/10.1016/j.molp.2023.09.010
Article CAS PubMed Google Scholar
Chi YH, Koo SS, Oh HT, Lee ES, Park JH, Phan KAT, Wi SD, Bae SB, Paeng SK, Chae HB (2019) The physiological functions of universal stress proteins and their molecular mechanism to protect plants from environmental stresses. Front Plant Sci 10:750. https://doi.org/10.3389/fpls.2019.00750
Article PubMed PubMed Central Google Scholar
Chorev M, Carmel L (2012) The function of introns. Front Genet 3:55. https://doi.org/10.5808/GI.2015.13.4.112
Article PubMed PubMed Central Google Scholar
Choudhury FK, Rivero RM, Blumwald E, Mittler R (2017) Reactive oxygen species, abiotic stress and stress combination. Plant J 90(5):856–867. https://doi.org/10.1111/tpj.13299
Article CAS PubMed Google Scholar
Dhanyalakshmi K, Nataraja K (2021) Universal stress protein-like gene from mulberry enhances abiotic stress tolerance in Escherichia coli and Transgenic tobacco cells. Plant Biol 23(6):1190–1194. https://doi.org/10.1111/plb.13311
Article CAS PubMed Google Scholar
Duvaud S, Gabella C, Lisacek F, Stockinger H, Ioannidis V, Durinx C (2021) Expasy, the Swiss bioinformatics resource portal, as designed by its users. Nucleic Acids Res 49(W1):W216–W227. https://doi.org/10.1093/nar/gkab225
Article CAS PubMed PubMed Central Google Scholar
Eshkiki EM, Hajiahmadi Z, Abedi A, Kordrostami M, Jacquard C (2020) In Silico analyses of autophagy-related genes in rapeseed (Brassica Napus L.) under different abiotic stresses and in various tissues. Plants 9(10):1393. https://doi.org/10.3390/plants9101393
Article CAS PubMed PubMed Central Google Scholar
Fan M, Gao S, Yang Y, Yang S, Wang H, Shi L (2024) Genome-wide identification and expression analysis of the universal stress protein (USP) gene family in Arabidopsis thaliana, Zea mays, and Oryza sativa. Genetica 152(2):119–132. https://doi.org/10.1007/s10709-024-00209-0
Article CAS PubMed Google Scholar
Fang L, Cheng F, Wu J, Wang X (2012) The impact of genome triplication on tandem gene evolution in brassica Rapa. Front Plant Sci 3:261. https://doi.org/10.3389/fpls.2012.00261
Article CAS PubMed PubMed Central Google Scholar
Fujii Y, Khoshnoodi J, Takenaka H, Hosoyamada M, Nakajo A, Bessho F, Kudo A, Takahashi S, Arimura Y, Yamada A (2006) The effect of dexamethasone on defective nephrin transport caused by ER stress: a potential mechanism for the therapeutic action of glucocorticoids in the acquired glomerular diseases. Kidney Int 69(8):1350–1359. https://doi.org/10.1038/sj.ki.5000317
Article CAS PubMed Google Scholar
Gilroy S, Białasek M, Suzuki N, Górecka M, Devireddy AR, Karpiński S, Mittler R (2016) ROS, calcium, and electric signals: key mediators of rapid systemic signaling in plants. Plant Physiol 171(3):1606–1615. https://doi.org/10.1104/pp.16.00434
Article CAS PubMed PubMed Central Google Scholar
Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, Wang Y, Wang J (2008) Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis. J Genet Genom 35(2):105–118. https://doi.org/10.1016/S1673-8527(08)60016-8
Gutiérrez-Beltrán E, Personat JM, de la Torre F, Del Pozo O (2017) A universal stress protein involved in oxidative stress is a phosphorylation target for protein kinase CIPK6. Plant Physiol 173(1):836–852. https://doi.org/10.1104/pp.16.00949
Article CAS PubMed Google Scholar
Harrison PW, Amode MR, Austine-Orimoloye O, Azov AG, Barba M, Barnes I, Becker A, Bennett R, Berry A, Bhai J (2024) Ensembl 2024. Nucleic Acids Rese 52(D1):D891–D899. https://doi.org/10.1093/nar/gkad1049
Huang X, Ye Q, Chen M, Li A, Mi W, Fang Y, Zaytseva YY, O’Connor KL, Vander Kooi CW, Liu S (2019) N-glycosylation-defective splice variants of neuropilin-1 promote metastasis by activating endosomal signals. Nat Commun 10(1):3708. https://doi.org/10.1038/s41467-019-11580-4
Article CAS PubMed PubMed Central Google Scholar
Imran H, Gul A, Paracha RZ, Amir R, Munir F, Bhatti MF (2025) In Silico identification and functional annotation of universal stress protein (USP) gene family in Chenopodium Quinoa. Sci Rep 15(1):18264. https://doi.org/10.1038/s41598-025-03264-5
Article CAS PubMed PubMed Central Google Scholar
Isokpehi RD, Mahmud O, Mbah AN, Simmons SS, Avelar L, Rajnarayanan RV, Udensi UK, Ayensu WK, Cohly HH, Brown SD (2011) Developmental regulation of genes encoding universal stress proteins in schistosoma mansoni. Gene regul syst biol 5:GRSB. S7491. https://doi.org/10.4137/GRSB.S7491
Jacques F, Bolivar P, Pietras K, Hammarlund EU (2023) Roadmap to the study of gene and protein phylogeny and evolution—A practical guide. PLoS ONE 18(2):e0279597. https://doi.org/10.1371/journal.pone.0279597
Article CAS PubMed PubMed Central Google Scholar
Jung YJ, Melencion SMB, Lee ES, Park JH, Alinapon CV, Oh HT, Yun D-J, Chi YH, Lee SY (2015) Universal stress protein exhibits a redox-dependent chaperone function in Arabidopsis and enhances plant tolerance to heat shock and oxidative stress. Front Plant Sci 6:1141. https://doi.org/10.3389/fpls.2015.01141
Article PubMed PubMed Central Google Scholar
Kandel MB, Yamamoto S, Midorikawa R, Morise J, Wakazono Y, Oka S, Takamiya K (2018) N-glycosylation of the AMPA‐type glutamate receptor regulates cell surface expression and tetramer formation affecting channel function. J Neurochem 147(6):730–747. https://doi.org/10.1111/jnc.14565
Comments (0)