Discrete-Event Simulation Model for Cancer Interventions and Population Health in R (DESCIPHR): An Open-Source Pipeline

Abstract

Simulation models inform health policy decisions by integrating data from multiple sources and fore-casting outcomes when there is a lack of comprehensive evidence from empirical studies. Such models have long supported health policy for cancer, the first or second leading cause of death in over 100 countries. Discrete-event simulation (DES) and Bayesian calibration have gained traction in the field of Decision Science because they enable efficient and flexible modeling of complex health conditions and produce estimates of model parameters that reflect real-world disease epidemiology and data uncertainty given model constraints. This uncertainty is then propagated to model-generated outputs, enabling decision makers to determine the optimal strategy to recommend, assess confidence in the recommendation, and estimate the value of collecting additional information. However, there is limited end-to-end guidance on structuring a DES model for cancer progression, estimating its parameters using Bayesian calibration, and applying the calibration outputs to policy evaluation and other downstream tasks. To fill this gap, we introduce the DES Model for Cancer Interventions and Population Health in R (DESCIPHR), an open-source framework and codebase integrating a flexible DES model for the natural history of cancer, Bayesian calibration for parameter estimation, and screening strategy evaluation. We also introduce an automated method to generate data-informed parameter prior distributions and enhance the accuracy and flexibility of a neural network emulator-based Bayesian calibration algorithm. We anticipate that the adaptable DESCIPHR modeling template will facilitate the construction of future decision models evaluating the risks and benefits of health interventions.

Key points for decision makers

For simulation models to be useful for decision-making, they should accurately reproduce real-world outcomes and their uncertainty.

The DESCIPHR framework and code repository address a gap in open-source resources to fit an individual-level model for cancer progression to real-world data and forecast the impact of cancer screening interventions while accounting for data uncertainty.

The codebase is designed to be highly adaptable for researchers who wish to apply DESCIPHR for economic evaluation or for studying methodological questions.

Competing Interest Statement

The authors have declared no competing interest.

Funding Statement

SP was supported by the US National Institutes of Health (NIH Grant T15LM007033) and the National Science Foundation (NSF) Graduate Research Fellowship Program (Grant DGE-2146755). CMR was supported by grants U01-CA253913 from the National Cancer Institute (NCI) as part of the Cancer Intervention and Surveillance Modeling Network (CISNET). FAE was supported by grants U01-CA253913 and U01-CA265750 from the NCI as part of CISNET. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the NIH, NSF, NCI, or CISNET. Authors have no conflicts of interest to declare.

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