Zhou P-J, Xu Y, Xiao C-S, Ma Y-Q, Liu H-D (1994) New species of Haloarcula. Acta Microbiol Sin 34:89–95
Torreblanca M, Rodriguez-Valera F, Juez G, Ventosa A, Kamekura M, Kates M (1986) Classification of non-alkaliphilic halobacteria based on numerical taxonomy and polar lipid composition, and description of Haloarcula gen. nov. and Haloferax gen. nov. Syst Appl Microbiol 8:89–99. https://doi.org/10.1016/S0723-2020(86)80155-2
Ma X, Hu Y, Li X-X, Tan S, Cheng M, Hou J, Cui H-L (2024) Genome-based taxonomy of genera Haloarcula and Halomicroarcula, and description of six novel species of Haloarcula. Extremophiles 28:10. https://doi.org/10.1007/s00792-023-01329-9
Article PubMed CAS Google Scholar
Li X-X, Tan S, Cheng M, Yao Hu, Xue Ma, Hou J, Cui H-L (2024) Halospeciosus flavus gen. nov., sp. nov. and Haladaptatus caseinilyticus sp. nov., halophilic archaea isolated from saline soil of an inland solar saltern and offshore sediment. Int J Syst Evol Microbiol 74:006220. https://doi.org/10.1099/ijsem.0.006220
Hu Y, Ma X, Li X-X, Shun Tan, Mu Cheng, Hou J, Cui H-L (2024) Halomicrococcus gelatinilyticus sp. nov. and Halosimplex aquaticum sp. nov., halophilic archaea isolated from saline soil and an inland solar saltern. Int J Syst Evol Microbiol 74:006231. https://doi.org/10.1099/ijsem.0.006231
Sun Y-P, Wang B-B, Zheng X-W, Wu Z-P, Hou J, Cui H-L (2022) Description of Halosolutus amylolyticus gen. nov., sp. nov., Halosolutus halophilus sp. nov. and Halosolutus gelatinilyticus sp. nov., and genome-based taxonomy of genera Natribaculum and Halovarius. Int J Syst Evol Microbiol 72:005598. https://doi.org/10.1099/ijsem.0.005598
Cui H-L, Zhou P-J, Oren A, Liu S-J (2009) Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium. Extremophiles 13:31–37. https://doi.org/10.1007/s00792-008-0194-2
Article PubMed CAS Google Scholar
Minegishi H, Kamekura M, Itoh T, Echigo A, Usami R, Hashimoto T (2010) Further refinement of the phylogeny of the Halobacteriaceae based on the full-length RNA polymerase subunit B’ (rpoB’) gene. Int J Syst Evol Microbiol 60:2398–2408. https://doi.org/10.1099/ijs.0.017160-0
Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y, Seo H, Chun J (2017) Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 67:1613–1617. https://doi.org/10.1099/ijsem.0.001755
Article PubMed PubMed Central CAS Google Scholar
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729. https://doi.org/10.1093/molbev/mst197
Article PubMed PubMed Central CAS Google Scholar
Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376. https://doi.org/10.1007/BF01734359
Article PubMed CAS Google Scholar
Han D, Cui H-L (2020) Halostella pelagica sp. nov. and Halostella litorea sp. nov., isolated from salted brown alga Laminaria. Int J Syst Evol Microbiol 70:1969–1976. https://doi.org/10.1099/ijsem.0.004003
Article PubMed CAS Google Scholar
Li S-Y, Xin Y-J, Bao C-X, Hou J, Cui H-L (2022) Haloprofundus salilacus sp. nov., Haloprofundus halobius sp nov and Haloprofundus salinisoli sp. nov.: three extremely halophilic archaea isolated from salt lake and saline soil. Extremophiles 26:6. https://doi.org/10.1007/s00792-021-01255-8
Richter M, Rosselló-Móra R, Oliver Glöckner F, Peplies J (2016) JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 32:929–931. https://doi.org/10.1093/bioinformatics/btv681
Article PubMed CAS Google Scholar
Meier-Kolthoff JP, Sardà Carbasse J, Peinado-Olarte RL, Göker M (2022) TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes. Nucleic Acid Res 50:D801–D807. https://doi.org/10.1093/nar/gkab902
Article PubMed CAS Google Scholar
Luo C, Rodriguez-R LM, Konstantinidis KT (2014) MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences. Nucleic Acids Res 42:e73. https://doi.org/10.1093/nar/gku169
Article PubMed PubMed Central CAS Google Scholar
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O (2008) The RAST server: rapid annotations using subsystems technology. BMC Genom 9:75. https://doi.org/10.1186/1471-2164-9-75
Grant JR, Enns E, Marinier E, Mandal A, Herman EK, Chen C-Y, Graham M, Van Domselaar G, Stothard P (2023) Proksee: in-depth characterization and visualization of bacterial genomes. Nucleic Acids Res 51:W484–W492. https://doi.org/10.1093/nar/gkad326
Article PubMed PubMed Central CAS Google Scholar
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res 32:D277–D280. https://doi.org/10.1093/nar/gkh063
Article PubMed PubMed Central CAS Google Scholar
Sullivan MJ, Petty NK, Beatson SA (2011) Easyfig: a genome comparison visualizer. Bioinformatics 27:1009–1010. https://doi.org/10.1093/bioinformatics/btr039
Article PubMed PubMed Central CAS Google Scholar
Cui H-L, Hou J, Amoozegar MA, Dyall-Smith ML, de la Haba RR, Minegishi H, Montalvo-Rodriguez R, Oren A, SanchezPorro C, Ventosa A (2024) Proposed minimal standards for description of new taxa of the class Halobacteria. Int J Syst Evol Microbiol 74:006290. https://doi.org/10.1099/ijsem.0.006290
Article PubMed PubMed Central CAS Google Scholar
Wang B-B, Bao C-X, Sun Y-P, Hou J, Cui H-L (2023) Halobacterium wangiae sp. nov. and Halobacterium zhouii sp. nov., two extremely halophilic archaea isolated from sediment of a salt lake and saline soil of an inland saltern. Int J Syst Evol Microbiol 73:005922. https://doi.org/10.1099/ijsem.0.005922
Cui H-L, Gao X, Yang X, Xu X-W (2010) Halorussus rarus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern. Extremophiles 14:493–499. https://doi.org/10.1007/s00792-010-0329-0
Article PubMed CAS Google Scholar
Chun J, Oren A, Ventosa A, Christensen H, Arahal DR, da Costa MS, Rooney AP, Yi H, Xu X-W, De MS (2018) Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 68:461–466. https://doi.org/10.1099/ijsem.0.002516
Article PubMed CAS Google Scholar
Oren A (2008) Microbial life at high salt concentrations: phylogenetic and metabolic diversity. Saline Syst 4:2. https://doi.org/10.1186/1746-1448-4-2
Article PubMed PubMed Central CAS Google Scholar
Oren A (1999) Bioenergetic aspects of Halophilism. Microbiol Mol Biol Rev 63:334–348. https://doi.org/10.1128/MMBR.63.2.334-348.1999
Article PubMed PubMed Central CAS Google Scholar
Lanyi JK (1974) Salt-dependent properties of proteins from extremely halophilic bacteria. Bacteriol Rev 38:272–290. https://doi.org/10.1128/br.38.3.272-290.1974
Article PubMed PubMed Central CAS Google Scholar
Tan S, Zhu L-R, Zhang Q-K, Dong X-Y, Hou J, Cui H-L (2024) Genome-based classification of the family Haloferacaceae and description of five novel species of Halobaculum. Extremophiles 28:22. https://doi.org/10.1007/s00792-024-01337-3
Article PubMed CAS Google Scholar
Hong T, Ke J, Chen L, Hao Y, Lu P, Chen S (2024) Genomic, physiological, biochemical, and phenotypic evidences reveal a new species, Halomicroarcula salaria sp. nov. Curr Microbiol 81:71. https://doi.org/10.1007/s00284-023-03574-9
Article PubMed CAS Google Scholar
Ma X, Hu Y, Li X-X, Tan S, Cheng M, Hou J, Cui H-L (2023) Halomicroarcula laminariae sp. nov. and Halomicroarcula marina sp. nov., extremely halophilic archaea isolated from salted brown alga Laminaria and coastal saline-alkali lands. Int J Syst Evol Microbiol 73:005889. https://doi.org/10.1099/ijsem.0.005889
Comments (0)