Sub-5-min RP-UHPLC-TIMS for high-throughput untargeted lipidomics and its application to multiple matrices

Wenk M. The emerging field of lipidomics. Nat Rev Drug Discov. 2005;4:594–610. https://doi.org/10.1038/nrd1776.

Article  CAS  PubMed  Google Scholar 

Han X, Gross RW. The foundations and development of lipidomics. J Lipid Res. 2022;63(2): 100164. https://doi.org/10.1016/j.jlr.2021.100164.

Article  CAS  PubMed  Google Scholar 

Züllig T, Trötzmüller M, Köfeler HC. Lipidomics from sample preparation to data analysis: a primer. Anal Bioanal Chem. 2020;412:2191–209. https://doi.org/10.1007/s00216-019-02241-y.

Article  CAS  PubMed  Google Scholar 

Cajka T, Fiehn O. Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry. Trends Analyt Chem. 2014;61:192–206. https://doi.org/10.1016/j.trac.2014.04.017.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Xuan Q, Hu C, Yu D, Wang L, Zhou Y, Zhao X, Li Q, Hou X, Xu G. Development of a high coverage pseudotargeted lipidomics method based on ultra-high performance liquid chromatography-mass spectrometry. Anal Chem. 2018;90(12):7608–16. https://doi.org/10.1021/acs.analchem.8b01331.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Xu T, Hu C, Xuan Q, Xu G. Recent advances in analytical strategies for mass spectrometry-based lipidomics. Anal Chim Acta. 2020;1137:156–69. https://doi.org/10.1016/j.aca.2020.09.060.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kostidis S, Sánchez-López E, Giera M. Lipidomics analysis in drug discovery and development. Curr Opin Chem Biol. 2023;72: 102256. https://doi.org/10.1016/j.cbpa.2022.102256.

Article  CAS  PubMed  Google Scholar 

Zhang Y, Xie Y, Lv W, Hu C, Xu T, Liu X, Zhang R, Xu G, Xia Y, Zhao X. A high throughput lipidomics method and its application in atrial fibrillation based on 96-well plate pretreatment and liquid chromatography-mass spectrometry. J Chromatogr A. 2021;1651: 462271. https://doi.org/10.1016/j.chroma.2021.462271.

Article  CAS  PubMed  Google Scholar 

Jung HR, Sylvänne T, Koistinen KM, Tarasov K, Kauhanen D, Ekroos K. High throughput quantitative molecular lipidomics. Biochim Biophys Acta. 2011;1811(11):925–34. https://doi.org/10.1016/j.bbalip.2011.06.025.

Article  CAS  PubMed  Google Scholar 

Paglia G, Kliman M, Claude E, Scoot G, Astarita G. Applications of ion-mobility mass spectrometry for lipid analysis. Anal Bioanal Chem. 2015;407:4995–5007. https://doi.org/10.1007/s00216-015-8664-8.

Article  CAS  PubMed  Google Scholar 

Hinz C, Liggi S, Griffin JL. The potential of ion mobility mass spectrometry for high-throughput and high-resolution lipidomics. Curr Opin Chem Biol. 2018;42:42–50. https://doi.org/10.1016/j.cbpa.2017.10.018.

Article  CAS  PubMed  Google Scholar 

Vasilopoulou CG, Sulek K, Brunner AD, Meitei N, Schweiger-Hufnagel U, Meyer SW, Barsch A, Mann M, Meier F. Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts. Nat Commun. 2020;11:331. https://doi.org/10.1038/s41467-019-14044-x.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Meier F, Park MA, Mann M. Trapped ion mobility spectrometry and parallel accumulation-serial fragmentation in proteomics. Mol Cell Proteomics. 2021;20: 100138. https://doi.org/10.1016/j.mcpro.2021.100138.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Merciai F, Musella S, Sommella E, Bertamino A, D’Ursi AM, Campiglia P. Development and application of a fast ultra-high performance liquid chromatography-trapped ion mobility mass spectrometry method for untargeted lipidomics. J Chromatogr A. 2022;1673: 463124. https://doi.org/10.1016/j.chroma.2022.463124.

Article  CAS  PubMed  Google Scholar 

Skowronek P, Thielert M, Voytik E, Tanzer MC, Hansen FM, Willems S, Karayel O, Brunner AD, Meier F, Mann M. Rapid and in-depth coverage of the (phospho-)proteome with deep libraries and optimal window design for dia-PASEF. Mol Cell Proteomics. 2022;21(9): 100279. https://doi.org/10.1016/j.mcpro.2022.100279.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen X, Yin Y, Luo M, Zhou Z, Cai Y, Zhu ZJ. Trapped ion mobility spectrometry-mass spectrometry improves the coverage and accuracy of four-dimensional untargeted lipidomics. Anal Chim Acta. 2022;1210: 339886. https://doi.org/10.1016/j.aca.2022.339886.

Article  CAS  PubMed  Google Scholar 

Lerner R, Baker D, Schwitter C, Neuhaus S, Hauptmann T, Post JM, Kramer S, Bindila L. Four-dimensional trapped ion mobility spectrometry lipidomics for high throughput clinical profiling of human blood samples. Nat Commun. 2023;14(1):937. https://doi.org/10.1038/s41467-023-36520-1.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ciccarelli M, Merciai F, Carrizzo A, Sommella E, Di Pietro P, Caponigro V, Salviati E, Musella S, Sarno VD, Rusciano M, Toni AL, Iesu P, Izzo C, Schettino G, Conti V, Venturini E, Vitale C, Scarpati G, Bonadies D, Rispoli A, Polverino B, Poto S, Pagliano P, Piazza O, Licastro D, Vecchione C, Campiglia P. Untargeted lipidomics reveals specific lipid profiles in COVID-19 patients with different severity from Campania region (Italy). J Pharm Biomed Anal. 2022;217: 114827. https://doi.org/10.1016/j.jpba.2022.114827.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Tumanov S, Kamphorst JJ. Recent advances in expanding the coverage of the lipidome. Curr Opin Biotechnol. 2017;43:127–33. https://doi.org/10.1016/j.copbio.2016.11.008.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zhang F, Guo S, Zhang M, Zhang Z, Guo Y. Characterizing ion mobility and collision cross section of fatty acids using electrospray ion mobility mass spectrometry. J Mass Spectrom. 2015;50(7):906–13. https://doi.org/10.1002/jms.3600.

Article  CAS  PubMed  Google Scholar 

Xiang H, Zhang B, Wang Y, Xu N, Zhang F, Luo R, Ji M, Ding C. Region-resolved multi-omics of the mouse eye. Cell Rep. 2023;42(2): 112121. https://doi.org/10.1016/j.celrep.2023.112121.

Article  CAS  PubMed  Google Scholar 

Rust BM, Picklo MJ, Yan L, Mehus AA, Zeng H. Time-restricted feeding modifies the fecal lipidome and the gut microbiota. Nutrients. 2023;15(7):1562. https://doi.org/10.3390/nu15071562.

Article  CAS  PubMed  PubMed Central  Google Scholar 

dkowiak J, Jirásko R, Kolářová D, Bártl J, Hájek T, Antonelli M, Vaňková Z, Wolrab D, Hrstka R, Študentová H, Melichar B, Pešková K, Holčapek M. Robust and high-throughput lipidomic quantitation of human blood samples using flow injection analysis with tandem mass spectrometry for clinical use. Anal Bioanal Chem. 2023;415(5):935-951. https://doi.org/10.1007/s00216-022-04490-w.

Cajka T, Smilowitz JT, Fiehn O. Validating quantitative untargeted lipidomics across nine liquid chromatography-high-resolution mass spectrometry platforms. Anal Chem. 2017;89(22):12360–8. https://doi.org/10.1021/acs.analchem.7b03404.

Article  CAS  PubMed  Google Scholar 

Koelmel JP, Cochran JA, Ulmer CZ, Levy AJ, Patterson RE, Olsen BC, Yost RA, Bowden JA, Garrett TJ. Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values. BMC Bioinformatics.2019;20(1): 217. https://doi.org/10.1186/s12859-019-2803-8.

Bartosova Z, Gonzalez SV, Voigt A, Bruheim P. High throughput semiquantitative UHPSFC-MS/MS lipid profiling and lipid class determination. J Chromatogr Sci. 2021;59(7):670–80. https://doi.org/10.1093/chromsci/bmaa121.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Drotleff B, Illison J, Schlotterbeck J, Lukowski R, Lämmerhofer M. Comprehensive lipidomics of mouse plasma using class-specific surrogate calibrants and SWATH acquisition for large-scale lipid quantification in untargeted analysis. Anal Chim Acta. 2019;1086:90–102. https://doi.org/10.1016/j.aca.2019.08.030.

Article  CAS  PubMed  Google Scholar 

Choi J, Yin T, Shinozaki K, Lampe JW, Stevens JF, Becker LB, Kim J. Comprehensive analysis of phospholipids in the brain, heart, kidney, and liver: brain phospholipids are least enriched with polyunsaturated fatty acids. Mol Cell Biochem. 2018;442(1–2):187–201. https://doi.org/10.1007/s11010-017-3203-x.

Article  CAS  PubMed  Google Scholar 

留言 (0)

沒有登入
gif